BAC Information

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BAC

Clone NameMSMg01-335C07
Chromosome2 (Build37)
Map Location 169,960,177 - 169,960,403
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668954, Tshz2, LOC100043737, LOC100043910, Zfp217
Downstream geneSilg111, LOC100043739, Bcas1, LOC228916, Cyp24a1, Pfdn4, 4930470P17Rik, Dok5, LOC668955
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-335C07.T7 (MSMg01no335_c07.b1)MSMg01-335C07.TJ (MSMg01no335_c07.g1)
ACCAG450469AG450470
length718766
length of high quality
(start - end)
44 (249 - 292)228 (72 - 299)
definitionCHROMAT_FILE: MSMg01no335_c07.b1 PHD_FILE: MSMg01no335_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:48 2005CHROMAT_FILE: MSMg01no335_c07.g1 PHD_FILE: MSMg01no335_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAATCCGCGGAATTCTAGGC
CATTTCCAGTCTATATAGAGTTCTAAGCCAGCCAGGGCTATGCTACATAG
TAAGACCTCGAGCACGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTCTG
TGTGTGTGTGTGTGAATGATCACCATCATTATCATCATCACCACCACCAC
CACCATTATCTGCATCATCAACGTCAGGCGCTGAGGATTTAGCAGTTAGG
TACCAGGCTTTACATTCTATTGTCTTCTCTCAACAAATGTTGGTGCTGAG
CAATGTTCTTCTCTCACAATATTTCAGAGAAAACAGGCTTATTGAGCTAA
TACCTGCTTGGTTGGCACCAAGTTTATTCTTGGTGTGCAAAAGTTTGGGG
ACAGAGTCAGTTGCCTTAACATTCCAGCTAAAAGCCAAGAGCTGTTGTTT
GATTAACAAAAAAAAAAGTATAGTAAAACACAAAATACAGAACAGGAAAT
AGAAGGTTGTGACTTCATGTAAAACAACAGAATCATATTCCTGTGTTACA
CCCATGAGTGAGAAAGTATTATCGTGGCATTGTACCACCTTAAGCATACA
ATATGTATTCCCATTGCCTGCCTTGCAAAAAATGGTTTTGATCTTCCATA
GTCTTTAAAAACAATTTGAGGCTCTCTGGCTTTCTTACTTGTTCTATATA
TTTATATCTACACTCCAG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGTGCTTGTGTCTTTTCTCTGTCCTCCCT
TGTCCCGTTGGGAAAACCTGTTGAGCCAAGGAGGTTTTGAGAGGGGCTTC
CCTGGGAATGTTGTATGTATAAATATTTAAGGCAGTTCCCATGAACATTC
AGAGAGAGGGCAACCTTGTGAACCAGCAGTAATAGAGAAAGGGGCAGTTG
TGTCTGTGAGGGGCAAACAAACTTGTGCAAGGGGCAGATGTGCTTAGAAT
CAACTGGTGTTCTCAGCCCAATCAAGGTTGATTTAGTCAATCAAGTCGGA
TTATATCTCAACCTCTATTTATATTGAGCTTTGCGCTTAGCCCCTCCCTT
CTTGGTTTGCTTGTAAAAACCAGCATTCACATCTCCTCCTGCATTGTTCC
GGGTCAGGCGGACTGGCTGGTTCCTAGGATCTCCAGTTCCCATCACCGTC
TTCCTTTCCTGAAAGGCAATTTCTGCCCTTTACTTTTTGCTTCCTATTAT
TTGGTACTCTTCATTTTGCATGTTTTTCTTTCGCCGTTTATTTTTCCCCA
TTGTCTTTTTTTTATCCGCTCTTTCTTCGTCTTTTTTCACCCCCCCCCTT
TCTCTTTCTGGTTTTTTATTCCCTACCGCACATTTTTTTGCTCTACGGCT
TCTCCCCTCCCTATAACTCCCTCGCTCTATTCCGTTTGTCATTTTGTTTG
TTTCCCACCCCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no335_c07.g1 MSMg01no335_c07.g1 CHROMAT_FILE:
MSMg01no335_c07.g1 PHD_FILE: MSMg01no335_c07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:48 2005
         (228 letters)



>mm_chr2_169959977_169960603
          Length = 627

 Score =  402 bits (208), Expect = e-117
 Identities = 223/228 (97%), Gaps = 1/228 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgcttgtgtcttttctctgtcctcccttgtcccgttgggaaaacctgttgagccaagg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 427 agtgcttgtgtcttttctctgtcctcccttgtcccgttgggaaaacctgttgagccgagg 368

                                                                       
Query: 61  aggttttgagaggggcttccctgggaatgttgtatgtataaatatttaaggcagttccca 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 367 aggttttgagaggggcttccct-ggaatgttgtatgtataaatatttaaggcagttccca 309

                                                                       
Query: 121 tgaacattcagagagagggcaaccttgtgaaccagcagtaatagagaaaggggcagttgt 180
           ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 308 tgaacattcagagagagggcacccttgtgaactagcagtaatagagaaaggggcagttgt 249

                                                           
Query: 181 gtctgtgaggggcaaacaaacttgtgcaaggggcagatgtgcttagaa 228
           ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 248 gtctgtgaggggcaaacaaacttgtgcaaagggcagatgtgcttagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 627
Length adjustment: 9
Effective length of query: 219
Effective length of database: 618
Effective search space:   135342
Effective search space used:   135342
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)