NCCTCCCTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAAGGACTTCACAATTTCCTTAAAAATGACTTATAATTGT
TTCTTCTCACCTACAAGGCAAAATGGATCAGATAGGTTAGTAAAGAAAAA
AAATATAAAGAAATTTTTAGCTAGTAAGAAGACATATATTCAATTGTCAA
CAGAAATAACCAAGTAGAAACAAATTGCAGAATCAGGTCAATTCCATTCA
GTCACTGTAAGAAAGTGACTGAAAAGAAAATTAGAAAGAAAATGAGAGAC
TGAAAGCATTACACTAAGAATCTTGGGAACGGCGTGGAAAGAGGAGAAAG
CAATGGGAGTTTTACAGAGATATTTTCATGCGTTTGTTTTCGTTTGTGAG
CCAATGTCACCTGCAACCTTCTCGCCATACTGGTCTTGACTTTGAGATAT
ACTCAGGGCAGGCCTTGAAGGTCTGATCCTCCTCCTGCCTTCCCTTCTGG
TGTTCCGGAATTATAGGCATGAGTCACCACAATAGGCTTGGAAATGTTAA
GGAGTCATAGTAGGACTAATGTTGATAAGCACATGTGATTTCATGAAAAC
AGAAATTTAAATATATGACTAAAGTGGTGGTTTAAATGAGAAATGTACCC
CATAGGCTTATGTCTTTAAACATTTGGTGCCCAATTAGCAGTGCTTTCAG
TGAAGTGAAGTGATCTTTAGATGTGGTCTTGCTGGA

NCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTACCTGCCCATGAATCCCATTG
CCCTGACTTGTCCACGTTGTTTGGCCTCACTGAGAGAGTATGTGCCTAGT
CCGGCAGTGACTGATGTGCAGGGAGGTGGAGGGGGGTAATACCAGAGGGA
GGCTCCCCCTTATTAGAGGAGAAGGGGAGGGGGGACCAGGGAAGGAATGT
GAGGTAGAACTGGGAGGTAAATTACTTACTTACTTACTTAATTAATTAAT
TAATTAATTTTACAAAAGAGTTTTGTTTCTACTAAAGTTATGGGATCATG
GAAGAGGTTGTTGATAATCTACCCTCTTCATTTTCCCCCCCTCAGGACAG
ATTGCCTCCCCACAAGGCAGTAGAAGGCAACAGGACCAGATAATTGTGAA
GTTCAAAATCTGAAAACCAGGAGCCTGTGCATCTTCCCTTCTTATATGCT
GGTTAATCTCAGGTACCCTATGATATCACCAATCTACTAACTACTCTGCA
TGATACCGAACATACCTTCATTGTTGTCATATGAAATTGGTATCTTTGAC
TTGCCCGTACACTTCTGGTCGTTATCCACTATTTTTTTATCTCTTTTACC
TTGACAACTCTGACTATTCTTTTTCTCCTGTTCGCTCTTTTTTTCGCTTT
TTTCCCAATCATTCTTGTTTTTTTCGCTCTCCCCCTTATCCTCACCCTTC
TCTACTTTATTGCTTACCTTTGCTCN

Query= MSMg01no335_c08.b1 MSMg01no335_c08.b1 CHROMAT_FILE:
MSMg01no335_c08.b1 PHD_FILE: MSMg01no335_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:48 2005
         (663 letters)



>mm_chr2_134512267_134513328
          Length = 1062

 Score =  899 bits (465), Expect = 0.0
 Identities = 501/513 (97%), Gaps = 1/513 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttccttaaaaatgacttataattgtttcttctcacctacaaggcaaaatggatcagat 60
           |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 512 atttccttaaaaataacttataattgtttcttctcacctacaaggcaaaatgaatcagat 453

                                                                       
Query: 61  aggttagtaaagaaaaaaaatataaagaaatttttagctagtaagaagacatatattcaa 120
           |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 452 aggttagtaaag-aaaaaaatataaagaaattttgagctagtaagaagacatatattgaa 394

                                                                       
Query: 121 ttgtcaacagaaataaccaagtagaaacaaattgcagaatcaggtcaattccattcagtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ttgtcaacagaaataaccaagtagaaacaaattgcagaatcaggtcaattccattcagtc 334

                                                                       
Query: 181 actgtaagaaagtgactgaaaagaaaattagaaagaaaatgagagactgaaagcattaca 240
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 333 actgtaagaaagtgactgaaaagaaaattagaaagaaaatgggagactgaaagcatcaca 274

                                                                       
Query: 241 ctaagaatcttgggaacggcgtggaaagaggagaaagcaatgggagttttacagagatat 300
           |||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||
Sbjct: 273 ctaagaatcttgggaacgacttggaaagaggagaaagcaatgggagttttacggagatat 214

                                                                       
Query: 301 tttcatgcgtttgttttcgtttgtgagccaatgtcacctgcaaccttctcgccatactgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 tttcatgcgtttgttttcgtttgtgagccaatgtcacctgcaaccttctcgccatactgg 154

                                                                       
Query: 361 tcttgactttgagatatactcagggcaggccttgaaggtctgatcctcctcctgccttcc 420
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 153 tcttgactttgagatatactcagggcaggccttgaagggctgatcctcctcctgccttcc 94

                                                                       
Query: 421 cttctggtgttccggaattataggcatgagtcaccacaataggcttggaaatgttaagga 480
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 93  cttctggtgttccggaattatagacatgagtcaccacaataggcttggaaatgttaagga 34

                                            
Query: 481 gtcatagtaggactaatgttgataagcacatgt 513
           |||||||||||||||||||||||||||||||||
Sbjct: 33  gtcatagtaggactaatgttgataagcacatgt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1062
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1052
Effective search space:   686956
Effective search space used:   686956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)