Query= MSMg01no335_l14.b1 MSMg01no335_l14.b1 CHROMAT_FILE:
MSMg01no335_l14.b1 PHD_FILE: MSMg01no335_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:34 2005
(587 letters)
>mm_chr2_87466020_87467005
Length = 986
Score = 1065 bits (551), Expect = 0.0
Identities = 576/585 (98%), Gaps = 4/585 (0%)
Strand = Plus / Plus
Query: 5 gaattcagtcattgcactaattgtaaaggatgaactaaaaacatgatcatactggggtga 64
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 205 gaattcagtcattgcattaattgtaaaggatgaactaaaa-catgatcatactggggtga 263
Query: 65 tgaaaagtggtctggaattagatagaggcaggagatagtatgagcttatggacaatctaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgaaaagtggtctggaattagatagaggcaggagatagtatgagcttatggacaatctaa 323
Query: 125 aaagacacatgagggctggaaagatggttcagtggttaagagcactgactgctcttccag 184
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 324 aaagacacatgagggctggaaaggtggttcagtggttgagagcactgactgctcttccag 383
Query: 185 aggtcctgagttcaattcccagcaaccacatggtggctcacaaccatctctaatggaatc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aggtcctgagttcaattcccagcaaccacatggtggctcacaaccatctctaatggaatc 443
Query: 245 tggtgacctcttctgttgtgcctaatgacagctacagtgtactcatataaataaaataaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tggtgacctcttctgttgtgcctaatgacagctacagtgtactcatataaataaaataaa 503
Query: 305 taaatcctttt--aaaaaataaaaagatacatgaatactaaaatgtcattttaaaagaat 362
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 504 taaatcctttttaaaaaaataaaaagagacatgaatactaaaatgtcattttaaaagaat 563
Query: 363 agatattatagggctggagagatgttatttgcttatctttctggggaaaatgggaactgg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agatattatagggctggagagatgttatttgcttatctttctggggaaaatgggaactgg 623
Query: 423 ctttggatcctatcactcataacagcttaaacaatctcttttaactctggttgtaagaga 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctttggatcctatcactcataacagcttaaacaatctcttttaactctggttgtaagaga 683
Query: 483 tccagtgccctcttctgacctcttttggcaataaacacttataaactcatgaagagaaaa 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tccagtgccctcttctgacctcttttggcaataaacacttataaactcatgaagagaaaa 743
Query: 543 a-cactcacagaaaatgaaaataaagaaatcaggttcttttttgg 586
| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 744 aacactcacagaaaatgaagataaagaaatcaggttcttttttgg 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 986
Length adjustment: 10
Effective length of query: 577
Effective length of database: 976
Effective search space: 563152
Effective search space used: 563152
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no335_l14.g1 MSMg01no335_l14.g1 CHROMAT_FILE:
MSMg01no335_l14.g1 PHD_FILE: MSMg01no335_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:35 2005
(506 letters)
>mm_chr2_87641884_87642789
Length = 906
Score = 955 bits (494), Expect = 0.0
Identities = 503/506 (99%)
Strand = Plus / Minus
Query: 1 agtaaaggaagaacaattttccccttccattcttctttgcatgtctaaatgtttacaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 agtaaaggaagaacaattttccccttccattcttctttgcatgtctaaatgtttacaaaa 647
Query: 61 tgttaatgagaatgggaaatataggtattgccttctggatatcaacaatgcacctacaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 646 tgttaatgagaatgggaaatataggtattgccttctggatatcaacaatgcccctacaac 587
Query: 121 acagaatataattggcttcaggtattattattctaaaagtaagtcataagtcagtttaaa 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 acagaacataattggcttcaggtattattattctaaaagtaagtcataagtcagtttaaa 527
Query: 181 gatccatagctttttagttgtaagattgttaaagctaacatctcagctagactgtttaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gatccatagctttttagttgtaagattgttaaagctaacatctcagctagactgtttaga 467
Query: 241 aaatttgattaaatttccgtgtcattcatgaagcatgctgctttctacaaattccataat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 aaatttgattaaatttccgtgtcattcatgaagcatgctgctttctacaaattccataat 407
Query: 301 ttctgtgagtcaaatttcctaggtatggagtatacttatctcaaggaaatatttgaaatt 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ttctgtgagtcaaatttccttggtatggagtatacttatctcaaggaaatatttgaaatt 347
Query: 361 caaaatgacatcaaagaaatctggcattagagccagtgtaatcgagcttattctgtgctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 caaaatgacatcaaagaaatctggcattagagccagtgtaatcgagcttattctgtgctt 287
Query: 421 tggagtattcatgtgacacaggaggatctcattgtctcttaaatgaatcatggtggattt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tggagtattcatgtgacacaggaggatctcattgtctcttaaatgaatcatggtggattt 227
Query: 481 gaaacgaattttaatcagttatagaa 506
||||||||||||||||||||||||||
Sbjct: 226 gaaacgaattttaatcagttatagaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space: 444416
Effective search space used: 444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
