TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTGTTCTTTTCTGAGCCCCATTTTTTAATGGGGTTATTTGCTTTTCTGA
AGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGACCCCTATCT
GATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGT
CTTACTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGT
CCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTC
AGGAATTTTTCCCCTGTGCCCATATCTTAGAGGCTTTTCCCCACTTTCTC
CTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTTTGATCCATT
TAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTT
CTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTC
TTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCAT
AGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGGCTACT
TGTCTGTCTCTATACCAGTACCATGCAGTTTTTACCACAATTGCTCTGTA
GTAAAGCTTTAGGTCATGCTTGCTGATTTCCCCCAAAGATTCTTTTTGCC
CTTAAAAAGATTTTGGTATCCCAGATTTTTGGT

ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTCTCCTGCTCCCCAAAAGGGATAGGGGC
ACATTTATTTTGTTACTCAGTATTGACTCATAACAGGGTTTAATTATGAT
AGAAATAATATCTTCATAAACTTATTAGTCTTTAGTTGAAGAGGCTTCAA
GTTGGAAAACAATAAATTGTTTATATAGCAAAGTTGTTTACTCTTCAGAC
AAGAGGATGGGCTATAGAGGGAGGACCCACGATGCTGTTGCTGTTCTCAT
GTCTCCTTTGCTTACATACTCTCCGCTAGGGGTTACCCAACTCCTCACTT
CCACTCTTTATAGTTCACGTCTCTATAAGCAACTCATAGGGAATATAGCT
CCATGTTTCTCTGCTGTAAGGATTGCTTGGGAATTGATTTAAAAAGGGTG
CTCTGAGATAATATTTCCTTGGCTTACAGAATAGGGTGTAAACAGAAGTG
CTTGGGTGCAATTTTCATTTGAGCCACAGTAATCGATTTAGGCAGAGAAT
GAAGCAAATTCAATCACAGCCAGCAATATAAAAGTGCTGTTCTGAATGAC
TTAGTGGGTATTTTGCCTGCTCAGCTTGAAGAAGGCAGGGAAATGATCTT
GGGAATATCACCAAAGGTTGAGATCAACACATCCCTGTCCTCACTCTGGA
GGAGGTATTGTCTCGAGGGTAATCCCCTGTATT

Query= MSMg01no336_c09.g1 MSMg01no336_c09.g1 CHROMAT_FILE:
MSMg01no336_c09.g1 PHD_FILE: MSMg01no336_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:08 2005
         (581 letters)



>mm_chr2_139407524_139408505
          Length = 982

 Score =  735 bits (380), Expect = 0.0
 Identities = 499/594 (84%), Gaps = 86/594 (14%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctcctgctccccaaaagggataggggcac------------atttattttgttactc 48
           ||||||||||||||||||||||||||||||||            ||||||||||||||||
Sbjct: 884 actctcctgctccccaaaagggataggggcacatttattttgttatttattttgttactc 825

                                                                       
Query: 49  agtattgactcataacagggtttaattatgatagaaataatatcttcataaacttattag 108
           ||||||||||||||||||||||||||||||||||||||||||                  
Sbjct: 824 agtattgactcataacagggtttaattatgatagaaataata------------------ 783

                                                                       
Query: 109 tctttagttgaagaggcttcaagttggaaaacaataaattgtttatatagcaaagttgtt 168
                                                                  |||||
Sbjct: 782 -------------------------------------------------------ttgtt 778

                                                                       
Query: 169 tactcttcagacaagaggatgggctatagagggaggacccacgatgctgttgctgttctc 228
           |||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||
Sbjct: 777 tactcttcagacaagaggatgggctgcagagggaggacccacaatgctgttgctgttctc 718

                                                                       
Query: 229 atgtctcctttgcttacatactctccgctaggggttacccaactcctcacttccactctt 288
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 atgtctcctttgcagacatactctccgctaggggttacccaactcctcacttccactctt 658

                                                                       
Query: 289 tatagttcacgtctctataagcaactcatagggaatatagctccatgtttctctgctgta 348
           ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 657 tatagttcacgtctctataagcaactcatagggaatacagccccatgtttctctgctgta 598

                                                                       
Query: 349 aggattgcttgggaattgatttaaaaagggtgctctgagataatatttccttggc-ttac 407
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 597 aggattgcttgggaattgatttaaaaagggtgctctgagataatatttccttggctttac 538

                                                                       
Query: 408 agaatagggtgtaaacagaagtgcttgggtgcaattttcatttgagccacagtaatcgat 467
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 537 agaatagggtgtaaacagaagtgcttgggcgcaattttcatttgagccacagtaatcgat 478

                                                                       
Query: 468 ttaggcagagaatgaagcaaattcaatcacagccagcaatataaaagtgctgttctgaat 527
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ttaggcagagaatgaagcaaattcaatcacagccagcaatataaaagtgctgttctgaat 418

                                                                 
Query: 528 gacttagtgggtattttgcctgctcagcttgaagaaggcagggaaatgatcttg 581
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 417 gacttagtgggtattttgcctgctcagcttgaagaaggcaggaaaatgatcttg 364


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 982
Length adjustment: 10
Effective length of query: 571
Effective length of database: 972
Effective search space:   555012
Effective search space used:   555012
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)