BAC Information

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BAC

Clone NameMSMg01-336F11
Chromosome2 (Build37)
Map Location 86,013,792 - 86,014,119
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044
Downstream geneOlfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336F11.T7 (MSMg01no336_f11.b1)MSMg01-336F11.TJ (MSMg01no336_f11.g1)
ACCAG451383AG451384
length738746
length of high quality
(start - end)		577 (40 - 616)425 (70 - 494)
definitionCHROMAT_FILE: MSMg01no336_f11.b1 PHD_FILE: MSMg01no336_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:23 2005CHROMAT_FILE: MSMg01no336_f11.g1 PHD_FILE: MSMg01no336_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TTGTTTACCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGGA
GTCCACCTTCTTGAGTTCTTTGTATATATTGGATATTAGTCCTCTATCTG
ATGTAGGATAGGTAAAGATGCTTTCCCAATCTGTTGGTGGCCTTTTTGTC
TTATTGATGGTGTCTTTTACCTTACAGAAGCTTTGCAGTTTCATGAGGTC
CCATTTGTCAATTCTAGATCTTACAGCACAAGCCATTGCTGTTCTATTCA
GGAATTTTTCCCCTGTGCCAATATCTTCGAGGTTTTTCCCCACTTTCTCC
TCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATCCACTT
AGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTTGCATTCTTT
TACATGATAACACCATTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTT
TTTTCCACTGGATGGTTTTGGCTCCCTTGTTGAAGATCAAGTTACCATAG
GTGTGTGGGTTCATTTCTGGGTCTTGAATTCTATTCCATTAGTCTACTTT
TATGTCGTTATACGAGTACCATGCCCGTTTTATCACAATTGCTCTGTAGT
ATAGCTTTAGGTCAGGCATGGTGGATTCCACCCGAGGTTTCTTTTTTTCT
TTGAGAAGAATTTTTGCTATCCTAGGTTTTTTGGTATN

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAAGCTGGACCCAAGGCATCTCATGATAATA
TATTCTTTATGACTTCATCTTTCCCCTCAGCAGAGCTCATCCTAACGAGG
ACAGAAATGATGTAAACATAGAGCAAAAGGATAGTCAGAAGGAAGGATCT
AAGTGTGATGGTGCATGCTTATAATCCCAGAATTTAAGAGGTGAAGGCAG
CAGGAATAAGGCATTCAAATTCACCCTCATTTGTATATAGAATGGCAAAG
GACTATTTCTCATATCACAAATATATATATATATATATATAGATAGATAG
ATAGATAGATAGATAGATAGATATAGATATAGATATAGATATAGATATAG
ATATAGATATAGATATAGATATAGATATAGATATAGATATAGATATAGAT
ATAGATATAGATATAGATATAGATATAGATATAGATATATAGATATATAT
ATATATATATATATATATATATATATATATATTTATATATATATATATAT
GTATATATATATANATATATATATATATATATATATTATTATATNTATAG
GATAATNATGTTTTGTGTTTAAATGGAGTTAGTATTTTNNGTTTATGTGG
GTTTTTAAATNTAATTTGTTTTTTTATTTTAAGTTTAATTGATAGGTGTA
AGTGTNTTTTTTTTTAGTGTGTTTATTTTTGTTTTTTGATTTGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_f11.g1 MSMg01no336_f11.g1 CHROMAT_FILE:
MSMg01no336_f11.g1 PHD_FILE: MSMg01no336_f11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:23 2005
         (425 letters)



>mm_chr2_86013787_86014611
          Length = 825

 Score =  507 bits (262), Expect = e-148
 Identities = 314/334 (94%), Gaps = 8/334 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagctggacccaaggcatctcatgataatatattctttatgacttcatctttcccctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 aaagctggacccaaggcatctcatgataatatattctttatgacttcatctttcccctca 274

                                                                       
Query: 61  gcagagctcatcctaacgaggacagaaatgatgtaaacatagagcaaaaggatagtcaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gcagagctcatcctaacgaggacagaaatgatgtaaacatagagcaaaaggatagtcaga 214

                                                                       
Query: 121 aggaaggatctaagtgtgatggtgcatgcttataatcccagaatttaagaggtgaaggca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 aggaaggatctaagtgtgatggtgcatgcttataatcccagaatttaagaggtgaaggca 154

                                                                       
Query: 181 gcaggaataaggcattcaaattcaccctcatttgtatatagaatggcaaaggactatttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 gcaggaataaggcattcaaattcaccctcatttgtatatagaatggcaaaggactatttc 94

                                                                       
Query: 241 tcatatcacaaatatatatatatatatatatagatagatagatagatagatagataga-- 298
           ||| | |||||||||| ||| | ||| | |||||  ||||||  ||||||  ||||||  
Sbjct: 93  tcaaaacacaaatatagatagagatagagataga--gataga--gataga--gatagaga 40

                                             
Query: 299 tagatatagatatagatatagatatagatataga 332
           |||| ||||| ||||| ||||| ||||| |||||
Sbjct: 39  tagagatagagatagagatagagatagagataga 6


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space:   339456
Effective search space used:   339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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