XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TATCTCTCCCCCAACAGTTACATATCTACACCTAACTCAGTTGTGTGTAT
CTCATTGACCTAACAGGGGACCCGGTGGCTGGTAAGAATGGAACAGCATC
CTGTTTCTAGCTAAGCGATGCATCAGCTAAGCACCTGAGAGGGTTCAAAA
TGTGCCTAAAGGTTGCCAAGGAGGTGGAATGAATTATTCCAGTGTCCCTG
GGCAAATGGGCAGTGATCTTTCAGTGTTGTTTAGGAGACAGTGAAACACA
AGAACAATAAAAAATGTTAACCTACTAAAGAATTAGGGGAACTGTTTACA
GGCTTGTAAGATGTTTGCAGTCCTGCTATCTAGACATGAGTCAAAGGAGC
TTTGAAGACGTTTTGGTTTCATGGTATTTCTTTTTAGCTCTAAGCTCCCC
ATTTAGAATCTAACGCAGGACTTTAAAACCTAATCCCCAGATAAGGATTA
TCTACTATGAGTTACTTACTCATCTGTTGGATTTTTTTTTTTAAGTTAAC
AATTCAGTGGAGTAAGCTTGAGATTTCAAAAAAGTTTAGTTTGAAATATA
GCTCTCGAGGACTCCAGGCCCAGCCCCTGCCCTAGAGCCAGGACTCCAGG
CCCAGCTGTGGAAAGGACCAGAATACTGGGTGACCTAGTCAGGACAGAAT
TCTATTGTTCTGGAAGATGGTGGG

ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTACCTGACAAAATTCACTGGGCACAAGTACAGGTCTCTCTCTC
TCTCTCTCTCTCTCTCTTTCTGTGTGTGTGTGTCTGTCTGTCTGTGTGTG
TGTTGAGGGGTGGTTTTCTCTGTGTTGTTACCTGGAACTTGCTTCGCAGA
CCAGGCTGGCTTCAAATTCACAGAGATCCACCTGCCTCTGCTTCTGTCTC
TGGCACACTAGAACTGTAGGCTTTAAGGCCAGGTAGGCAGTTCGACGAGC
GCGCGCGATTCTTTTTTTGTTTCACGCGGGTGGCTTTGGCCTGCTCACAG
AAGGATTTTATCTGTGTGTCCAGGCTTTGTGCGCCGGCCTTTCATAATTT
TTTGTATTCCTAAGAAAGGTTTCTGTCCTTGTCTATTCTATGTGGCTTTG
TGCATTGCACACCTTCCCATATCTCCCTATTAATTTTTCCTCAACTCTAT
CACCCCCCCTTAGTGTTCTCTCTCCATTACCATGTCCCCTTTATTTTCGT
TCGAAATTAACTATTTCCCCCCTTTTTTTTTCCTCTTCCCCCCGAATTGC
TGCACCCATTTGATTGTAACATTCCCCCTTCTTGTTTCGCTGCTTATATC
TTATTGCCCCGTTTTTTGTACCCCATTGCGCTTTTTTCTTTTTTCCTCCC
CCTCCCCCACACTTATTAAGCTATTATTGTCTCCCACCCCCCTTTTTTCG
CCTCCCCCTTCTCTCCTTTAACTTCCATTTATCTACCTATCTATCATA

Query= MSMg01no336_k01.b1 MSMg01no336_k01.b1 CHROMAT_FILE:
MSMg01no336_k01.b1 PHD_FILE: MSMg01no336_k01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:44 2005
         (620 letters)



>mm_chr2_34888806_34889825
          Length = 1020

 Score = 1106 bits (572), Expect = 0.0
 Identities = 605/616 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctatctctcccccaacagttacatatctacacctaactcagttgtgtgtatctca 64
           |||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 gaattctatctcacagccaacagttacatatctacacctaactcagttgtgtgtatctca 761

                                                                       
Query: 65  ttgacctaacaggggacccggtggctggtaagaatggaacagcatcctgtttctagctaa 124
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 ttgacctaacaggggacccagtggctggtaagaatggaacagcatcctgtttctagctaa 701

                                                                       
Query: 125 gcgatgcatcagctaagcacctgagagggttcaaaatgtgcctaaaggttgccaaggagg 184
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 700 gcgatgcatcagctaagcacctgggagggttcaaaatgtgcctaaaggttgccaaggagg 641

                                                                       
Query: 185 tggaatgaattattccagtgtccctgggcaaatgggcagtgatctttcagtgttgtttag 244
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 640 tggaatgaattattccagtgtccctgggcaaatgggcagtgatctctcagtgttgtttag 581

                                                                       
Query: 245 gagacagtgaaacacaagaacaataaaaaatgttaacctactaaagaattaggggaactg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 gagacagtgaaacacaagaacaataaaaaatgttaacctactaaagaattaggggaactg 521

                                                                       
Query: 305 tttacaggcttgtaagatgtttgcagtcctgctatctagacatgagtcaaaggagctttg 364
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tttacaggcttgtaagatgttcgcagtcctgctatctagacatgagtcaaaggagctttg 461

                                                                       
Query: 365 aagacgttttggtttcatggtatttctttttagctctaagctccccatttagaatctaac 424
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| 
Sbjct: 460 aagacgttttggtttcatggtatttctttttagctctaaactccccatttagaatctaat 401

                                                                       
Query: 425 gcaggactttaaaacctaatccccagataaggattatctactatgagttacttactcatc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gcaggactttaaaacctaatccccagataaggattatctactatgagttacttactcatc 341

                                                                       
Query: 485 tgttggatttttttttttaagttaacaattcagtggagtaagcttgagatttcaaaaaag 544
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 340 tgttggatttttttttttaagttaacaatttagtggagtaagcttgagatttcaaaaagg 281

                                                                       
Query: 545 tttagtttgaaatatagctctcgaggactccaggcccagcccctgccctagagccaggac 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tttagtttgaaatatagctctcgaggactccaggcccagcccctgccctagagccaggac 221

                           
Query: 605 tccaggcccagctgtg 620
           ||||||||||||||||
Sbjct: 220 tccaggcccagctgtg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space:   616100
Effective search space used:   616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)