Query= MSMg01no337_a01.b1 MSMg01no337_a01.b1 CHROMAT_FILE:
MSMg01no337_a01.b1 PHD_FILE: MSMg01no337_a01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:14 2005
(536 letters)
>mm_chr2_138232945_138233880
Length = 936
Score = 835 bits (432), Expect = 0.0
Identities = 492/532 (92%), Gaps = 32/532 (6%)
Strand = Plus / Minus
Query: 5 gaattcacacaagtatgggggatgggaggttttgagaatcagctggtggctttcccaaat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gaattcacacaagtatgggggatgggaggttttgagaatcagctggtggctttcccaaat 459
Query: 65 ctcaaatatcttattgttgggtcacaggatgacaaaagggtattattgctcccttgtttg 124
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 458 ctcaaatatcttattgttgggttacaggatgacaaaagggtattattgctcccttgtttg 399
Query: 125 tgaaactctttatctaacattattcctccattctgaactctcaggtagctatgccctgct 184
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 398 tgaaactctttatctaacattattcctccattttgaactctcaggtagctatgccctgct 339
Query: 185 tttagctgagggtaagaaatattcgcaagctcttgcataaactccagcacactcctgcaa 244
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 338 tttagctgagggtaagaaatattctcaagctcttgcataaactccagcacactcctgcaa 279
Query: 245 caaacctgagtgagatgaaacccatccacctggtagtttggaagacattcagaaaggtat 304
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 278 caaacctgagtgagatgaaatccacccacctggtagtttggaagacattcagaaaggtat 219
Query: 305 tttcttcatttagatctctctctctctctctctctctctctctctctctctctctctctc 364
|||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 218 tttcttcatttaga----------------tctctctctctctctctctctctctctctc 175
Query: 365 tctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtctgtgtgtctgtgtctgtg 424
|||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 174 tctctctctgtgtgtgtgtgtgtgtg----------------tgtgtgtctgtgtctgtg 131
Query: 425 tgtgtctgtctgtgtgtttgtgtgtgtgaatgtttgacatatataacatggataacattg 484
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 130 tgtgtctgtctgtgtgtttgtgtgtgtgaatgtttgacatacatgacatggataacattg 71
Query: 485 tagagtcaattctctccttctacctccatatagattctagggatcaaactca 536
|||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 tagagtcagttctctccttctacctccatatagattctagggatcaaactca 19
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 92
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space: 487076
Effective search space used: 487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no337_a01.g1 MSMg01no337_a01.g1 CHROMAT_FILE:
MSMg01no337_a01.g1 PHD_FILE: MSMg01no337_a01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:14 2005
(517 letters)
>mm_chr2_138057408_138058324
Length = 917
Score = 919 bits (475), Expect = 0.0
Identities = 513/541 (94%), Gaps = 24/541 (4%)
Strand = Plus / Plus
Query: 1 aatgaggactgggaaatggccttgggactcagtgtcaaagggtttgctgggtaccttggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 aatgaggactgggaaatggccttgggactcagtgtcaaagggtttgctgggtaccttggc 236
Query: 61 aagagtggattttatgagaacagtagagtaaaaactttaataggggctatctaagagaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 aagagtggattttatgagaacagtagagtaaaaactttaataggggctatctaagagaga 296
Query: 121 attggaagtgaggtctgtagcatcgtacctgtgaccacctcctcgtcagttcttgtccga 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 297 attggaagtgaggtctgtagcatcgtacctgtgagcacctcctcgtcagttcttgtccga 356
Query: 181 gaggtgttaaggaatattattattattg------------------------ttattatt 216
|||||||||||||||||||||||||||| ||||||||
Sbjct: 357 gaggtgttaaggaatattattattattgttattattattattattattattattattatt 416
Query: 217 attatttccacaactgtgattcattgcactagaaagatacaaaattgaattagccacatg 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 attatttccacaactgtgattcattgcactagaaagatacaaaattgaattagccacatg 476
Query: 277 atcagatgcagaggaagagctgtagagtaaaccagctgaattcttttaagactttttttt 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 atcagatgcagaggaagagctgtagagtaaaccagctgaattcttttaagactttttttt 536
Query: 337 tttggttttcacacaatacttgttcaatctgccagaagagactgtgagaaatcctgccaa 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 tttggttttcacacaatacttgttcaatctgccagaagagactgtgagaaatcctgccaa 596
Query: 397 gtagccacgttcacaagagcattagaacccaggatttttttccctggggggcagctatat 456
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 gtagccacgttcacaacagcattagaacccaggatttttttccctggggggcagctatat 656
Query: 457 aggcagcatcagactggtgtgcaccatgtaggcaacatctgactgatgtgcataaaagtt 516
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 657 aggcagcatcagactggtgtgcaccatgtaggtaacatctgactgatgtgcagaaaagtt 716
Query: 517 c 517
|
Sbjct: 717 c 717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
