Query= MSMg01no337_d13.b1 MSMg01no337_d13.b1 CHROMAT_FILE:
MSMg01no337_d13.b1 PHD_FILE: MSMg01no337_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:32 2005
(651 letters)
>mm_chr2_86098157_86099213
Length = 1057
Score = 955 bits (494), Expect = 0.0
Identities = 611/654 (93%), Gaps = 14/654 (2%)
Strand = Plus / Plus
Query: 6 aattcatctcttactcgtcttgtgctgtctatggtcagatgtaatagaaaat-cgcccat 64
||||||||||||||| |||||||| ||||||||||||||||||| | ||||| | |||||
Sbjct: 206 aattcatctcttacttgtcttgtggtgtctatggtcagatgtaagaaaaaatac-cccat 264
Query: 65 atctagtaata-aatatccaagaaagtatgtatccacttacctttaataaagaaactgat 123
|||||||| || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atctagtagtagaa-gtccaagaaagtatgtatccacttacctttaataaagaaactgat 323
Query: 124 tttccattc--atattgttaatatgatttccttgtgaatggggagtttatagctttcttc 181
||||||||| ||||| |||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 324 tttccattctaatattattaatatgataaccttgtgaatggagagtttatagctttcttc 383
Query: 182 cctcttggtaaagctccccaaggaaatttaatctatttaagttacatcactacaattaaa 241
||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||
Sbjct: 384 cctcttggtaaagctccccaaggaaatttaatctacttaagtcacatcattacaattaaa 443
Query: 242 tcttctgagaaacttaaaaataatatcttgatatttggtgctaattacttaggacatcct 301
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 444 tcttctgagaaacttaaaaataatatcttgatatttggtgctaattacctaggacatcct 503
Query: 302 acaagttcccttgtgagaaaaagtatgaaacaattcaaaaggagaaacaaaatattataa 361
||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||
Sbjct: 504 acaagttcccttgtgagaaaaagtatggaacaattcaaaaagagaatcaaaatattataa 563
Query: 362 aagattggtgaaatctggaagacatctccaatgtaaaggtattctaacattctcttctaa 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 564 aagattggtgaaatctggaagacatctccaatgtaaaggtattctaacattctcttc-aa 622
Query: 422 gaaaagtatgattaaagtataattatatacctcagaaaatgttacagctagagagaaatt 481
||||||||||||||| ||| || |||||||||||| ||| ||||||||||||||||||||
Sbjct: 623 gaaaagtatgattaaggtacaactatatacctcaggaaacgttacagctagagagaaatt 682
Query: 482 ttaatttagtacaagtagactcagtctaagtatatggatat------attttcttatact 535
||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 683 ttaatgtagtataagtagactcagtctaagtatatggatatggatatattttcttatact 742
Query: 536 atatatgcaattcagtagaacttatcagaaataaaatctactcttaggtaaaataactca 595
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 743 atagatgcaattcagtagaacttatcaggaataaaatctactcttaggtaaaataactca 802
Query: 596 aatctcataatattgcatgcaagttttctttatgacttcaacaaggtataaaaa 649
|||||||||| |||||||||| ||||||||||||||||||| |||||| |||||
Sbjct: 803 aatctcataa-attgcatgcatgttttctttatgacttcaaaaaggtagaaaaa 855
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1057
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1047
Effective search space: 671127
Effective search space used: 671127
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no337_d13.g1 MSMg01no337_d13.g1 CHROMAT_FILE:
MSMg01no337_d13.g1 PHD_FILE: MSMg01no337_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:32 2005
(593 letters)
>mm_chr2_86213601_86214599
Length = 999
Score = 696 bits (360), Expect = 0.0
Identities = 498/550 (90%), Gaps = 18/550 (3%)
Strand = Plus / Minus
Query: 60 atttaaagattttctttccctctttttttaaaaaaggcactgttcttcaaagatattttt 119
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 999 atttaaagatttcctttccttctttttttaaaaaaggcactgttcttcaaagatattgtt 940
Query: 120 ggtaaatgtcaggacctaaaacttcagaagcaattgtattta-----tt---gttatttt 171
|||||||||||||||||||||||||||||||||||| ||||| || ||| || |
Sbjct: 939 ggtaaatgtcaggacctaaaacttcagaagcaattggatttactgttttgtcgttgttgt 880
Query: 172 tgttgttgttttatcctatatttatttgcccaaaggagaaaaataataag-taatttaca 230
|||||||||||||||| |||||| ||| |||||||||||||||||||||| |||||||||
Sbjct: 879 tgttgttgttttatcccatattt-tttacccaaaggagaaaaataataagttaatttaca 821
Query: 231 agttaaaaattttatttttaagacagaatacaatttactgcaaggacaaccaagaggctt 290
|||||| |||||||||| |||||||||||||||||||||||||| || ||| | |||||
Sbjct: 820 agttaacaattttatttaaaagacagaatacaatttactgcaagggcagccagggggctt 761
Query: 291 aagttatggattatggtacagttattgcatcatgagcacaaaat-cttgagtccaagtct 349
|||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct: 760 aagttatggattatggtacagttattgcatcacgagcacaaaatgct-gagtccaagtct 702
Query: 350 tagtatgaacatgtcataattgacaaacaagagaatgcttcagcat-gactgtaggtttt 408
|| |||||| ||||||||||||| ||||||| |||||||||| || ||||| |||||||
Sbjct: 701 tactatgaaaatgtcataattgataaacaagggaatgcttcaacacagactggaggtttt 642
Query: 409 caagaatcatttcttaggaatgtcaataatcagacattctagcaacaaatgggtcctgaa 468
||||||||||||||||||||| ||||||||||||||||||||||||| | |||| |||||
Sbjct: 641 caagaatcatttcttaggaatatcaataatcagacattctagcaacagacgggttctgaa 582
Query: 469 caactattatagaaagttaaatccttcagttttttt-caaaatattattcattcatctga 527
||| ||||||||| ||||||||||||||| |||||| |||||||| |||||||||||| |
Sbjct: 581 caattattatagatagttaaatccttcaggttttttgcaaaatatcattcattcatctaa 522
Query: 528 c----attatttgagtatgcatttattttattcttaatgatatagtatgtaacaaaaatt 583
| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 521 ctcttaatatttgagtatgcatttattttattcttaatgatatactatgtaacaaaaatt 462
Query: 584 attatttttc 593
||||||||||
Sbjct: 461 attatttttc 452
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 999
Length adjustment: 10
Effective length of query: 583
Effective length of database: 989
Effective search space: 576587
Effective search space used: 576587
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
