Query= MSMg01no337_f05.b1 MSMg01no337_f05.b1 CHROMAT_FILE:
MSMg01no337_f05.b1 PHD_FILE: MSMg01no337_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:40 2005
(481 letters)
>mm_chr2_43575718_43576598
Length = 881
Score = 737 bits (381), Expect = 0.0
Identities = 444/477 (93%), Gaps = 20/477 (4%)
Strand = Plus / Plus
Query: 5 gaattcacacaacttacaaatgacataattattttgttttaggatgaaacatttggcctg 64
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 gaattcacacaacaaacaaatgacataattattttgttttaggatgaaacatttggcctg 273
Query: 65 ggcggtagcttagcatcataatgcttgcctagtgtgcacaaggccctggctcactcccca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ggcggtagcttagcatcataatgcttgcctagtgtgcacaaggccctggctcactcccca 333
Query: 125 gcactgcaaaaaaaaaaaaaaaaaaaaaaaaaaagcgatcttagtatcatgcaataacaa 184
||||||| ||||||||||||||||| ||||||| ||||||||| ||||||||
Sbjct: 334 gcactgc---------aaaaaaaaaaaaaaaaatgcgatctcagtatcatgtaataacaa 384
Query: 185 ttcattctttcatcagtagagaacctcagatttctttcttctctgaccttggtatcaagc 244
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 385 ttcattctttcatcagtagagaacctcagatttctttcttctctgacctttgtatcaagc 444
Query: 245 tgagaacatgatcacatgctccaaggtgtacaagctcgcctttgcatccagtttcaggga 304
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 445 tgagaacatgatcacacgctccaaggtgtacaagctcgcctttgcatccagtttcagtga 504
Query: 305 atgactcaaacagtaagcaaatgctaaaagcaaaacagatctgccattggaaacttcata 364
|||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atgactcaaa-----------tgctaaaagcaaaacagatctgccattggaaacttcata 553
Query: 365 aatagatccagtgtatttgctgctgacagattgaggcctgaaagcacttccatttcttga 424
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 aatacatccagtgtatttgctgctgacagattgaggcctgaaagcacttccatttcttga 613
Query: 425 atattaaatcatctttcttctggcaatgttattaggggttcagtaccacacggcaaa 481
|||||||| ||||||||||||||||||| |||||||||||||| |||||| ||||||
Sbjct: 614 atattaaaccatctttcttctggcaatgctattaggggttcaggaccacatggcaaa 670
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space: 410241
Effective search space used: 410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no337_f05.g1 MSMg01no337_f05.g1 CHROMAT_FILE:
MSMg01no337_f05.g1 PHD_FILE: MSMg01no337_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:40 2005
(405 letters)
>mm_chr2_43782382_43783186
Length = 805
Score = 777 bits (402), Expect = 0.0
Identities = 402/402 (100%)
Strand = Plus / Minus
Query: 1 aaatacaccaagaaagcataaatgagaaagattaaatcataacactgaaattttattcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 aaatacaccaagaaagcataaatgagaaagattaaatcataacactgaaattttattcaa 543
Query: 61 aaaagttatgggtatttggagtagacattgttttccttcataattttgtgcatcatgaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 aaaagttatgggtatttggagtagacattgttttccttcataattttgtgcatcatgaat 483
Query: 121 tttcatttcaaattgcagaggatttttaagtttttgctaaagtcaacatttaaaaatatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tttcatttcaaattgcagaggatttttaagtttttgctaaagtcaacatttaaaaatatt 423
Query: 181 gtgtggatgtaaaattatttcatctacacttaaagggtatataatggttgatgtttcagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gtgtggatgtaaaattatttcatctacacttaaagggtatataatggttgatgtttcagt 363
Query: 241 tttcatgtgtaacgtgcgtcttgttcaaacacaccaaagatagttttattaggactggca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tttcatgtgtaacgtgcgtcttgttcaaacacaccaaagatagttttattaggactggca 303
Query: 301 ggaatgataccaacatacattcatggactggttccatctgcatggaatatgcagatctca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ggaatgataccaacatacattcatggactggttccatctgcatggaatatgcagatctca 243
Query: 361 ctctaaatatagctccacactcttctgtgatgcctgagctga 402
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ctctaaatatagctccacactcttctgtgatgcctgagctga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space: 315216
Effective search space used: 315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
