Query= MSMg01no337_j16.b1 MSMg01no337_j16.b1 CHROMAT_FILE:
MSMg01no337_j16.b1 PHD_FILE: MSMg01no337_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:02 2005
(595 letters)
>mm_chr2_32561284_32562278
Length = 995
Score = 849 bits (439), Expect = 0.0
Identities = 466/475 (98%), Gaps = 2/475 (0%)
Strand = Plus / Minus
Query: 4 ggaattcagccctttgccagagattggacccagaaccgggtaagtgctctaccactgagc 63
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 476 ggaattcagccctttgctagagattgaacccagaaccgggtaagtgctctaccactgagc 417
Query: 64 cacgcccagtctcagggtttgtattcactgactccctccgcagcttcctggaagtcactg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 cacgcccagtctcagggtttgtattcactgactccctccgcagcttcctggaagtcactg 357
Query: 124 tgtataatagatttattgttggatttagacttcaccacagcccaggggactttctccagt 183
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 356 tgtataatagatttattgttggatttagacttcaccatagcccaggggactttctccagt 297
Query: 184 cgccattttccggttgagtttcatggctgggaattcaggctctagtaggttccaattaat 243
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 cgccattttccggttaagtttcatggctgggaattcaggctctagtaggttccaattaat 237
Query: 244 ta-tcctgatggagtagagtccattagaagtgaatgtctggggctggagagatggctcag 302
|| | ||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 236 tact-ctgatggagtagagtccattagaagtgaaggcctggggctggagagatggctcag 178
Query: 303 cagctaagagcactgactgctcttctggaggtcctgagttcaaatcccagcaaccacatg 362
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 177 cagctaagagcactgactgctcttctggaggtcctgagttcaaattccagcaaccacatg 118
Query: 363 gtggctcacaaccatctgtaatgagatctgatgccctctctggtatgtctgaagacagct 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 gtggctcacaaccatctgtaatgagatctgatgccctctctggtatgtctgaagacagct 58
Query: 423 acagtgtacttactatgtgtgataataaataaatctttcaaaaaaaaaaaaaaaa 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57 acagtgtacttactatgtgtgataataaataaatctttcaaaaaaaaaaaaaaaa 3
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space: 576225
Effective search space used: 576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no337_j16.g1 MSMg01no337_j16.g1 CHROMAT_FILE:
MSMg01no337_j16.g1 PHD_FILE: MSMg01no337_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:02 2005
(541 letters)
>mm_chr2_32424432_32425373
Length = 942
Score = 978 bits (506), Expect = 0.0
Identities = 530/538 (98%), Gaps = 1/538 (0%)
Strand = Plus / Plus
Query: 1 cagggctccaaaccaagcagttggtactgtcaggaagactgccccaaaccaagagcccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagggctccaaaccaagcagttggtactgtcaggaagactgccccaaaccaagagcccct 260
Query: 61 gcctaacccaagtcaaggtct-ggactggatggcccctccagtagacaagagctgccaca 119
||||||| |||| |||||||| ||||||||||||| ||||||||||| ||||||||||||
Sbjct: 261 gcctaactcaagccaaggtctgggactggatggccactccagtagacgagagctgccaca 320
Query: 120 tcctctgcttccaggcactgggcctggataacttagctgaaaacatgaccacaaccaaat 179
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctctgcttccaggcactgggccaggataacttagctgaaaacatgaccacaaccaaat 380
Query: 180 gaacactggtggcagccagaggctaagagcctttcctcctgcgctcagtgatccccacgg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaacactggtggcagccagaggctaagagcctttcctcctgcgctcagtgatccccacgg 440
Query: 240 gtgcccagagcacctggacttcaaattctatatacaaagatagaggatatattagaggta 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgcccagagcacctggacttcaaattctatatacaaagatagaggatatattagaggta 500
Query: 300 tttttggaaaggaattggtctatgcaatgccagtttgggacctgtaagacagtttaatgt 359
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttttgaaaaggaattggtctatgcaatgccagtttgggacctgtaagacagtttaatgt 560
Query: 360 ttctattagagagatataaaagatctgcaatatttttagggttcttttctggttacccta 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctattagagagatataaaagatctgcaatatttttagggttcttttctggttacccta 620
Query: 420 cagctgaccacgtggtctggcaggatgagcaggcccatcttcctctgtggggagaatttg 479
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 621 cagctgaccacgtggtctggcaggatgagcaggcccatcttcttctgtggggagaatttg 680
Query: 480 cttttgtgttattcctttctaaccaggttaccactgcaccccattccgtgggctgttc 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttttgtgttattcctttctaaccaggttaccactgcaccccattccgtgggctgttc 738
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 942
Length adjustment: 10
Effective length of query: 531
Effective length of database: 932
Effective search space: 494892
Effective search space used: 494892
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
