BAC Information

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BAC

Clone NameMSMg01-337P13
Chromosome2 (Build37)
Map Location 36,132,468 - 36,133,068
singlet/doubletsinglet
Overlap genenone
Upstream geneGsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194, Dab2ip, Ttll11, Ndufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf, LOC100040493, Ptgs1
Downstream geneOlfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362, Olfr364-ps1, Olfr365, Olfr366, Olfr367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337P13.T7 (MSMg01no337_p13.b1)MSMg01-337P13.TJ (MSMg01no337_p13.g1)
ACCAG452617AG452618
length764772
length of high quality
(start - end)		605 (39 - 643)562 (70 - 631)
definitionCHROMAT_FILE: MSMg01no337_p13.b1 PHD_FILE: MSMg01no337_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:30 2005CHROMAT_FILE: MSMg01no337_p13.g1 PHD_FILE: MSMg01no337_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:30 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAC
ATTCAATAATATACAGAGCTAGAGTTGCAGATGGATGAGGCTTCTAGGTA
GCAGAGAGTCAGCAATAAACATGAGCTCTAAATAGTATCATTAAATAAGA
GTGATCTTATACTAAACCATTTCTTCCAAGCTAGGCATTGTTAGAATGAA
AGGGTCTGTTTTGTACTCCATCTGCTTTATAGTCAATTGCTTCATGGCTT
GGTTAGGACATTTTGAAAATAACAATCAACTTAGACTACTTTCCCTTTGA
AATTCACATAGGAAGTTCAGGCACAGAGAGAATGCTAACGAAGACAATCC
ACATTTCCAAGCTATACTCATGCCTAGCATTGTTAGGAAATCTGAGTAAT
AAGGAATTCAGAAGTATGCTTTAGTTTATATTTTGGAAGGTAACCTAGCA
AAAGGGTTTAAGAGCACAAACTCTAGGATCCGAGTTTGAATCCTAGTTCC
TTATTCACCATATGGATCTTAAACATATTATTTTACTTCTTGTTGACTCT
GTCATTTCTCTTGTACAGTTTAGTGGGGTGGTATGGAAGGTAAATGTACC
GATGAACATAAATTATTCAATACAGCATCTGGCATGTTGAAAATAGTATG
TTTTACCATTGTCATTGAACAGATTCTGCGTGTGATTCTCTATTCCTAAA
AGATGNAATGTGTTGCATAAAGTGGATATTTAAGAAAGATTTTCCTTGCT
CGGGACAGTATTAA

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATAAAAAAATTAGAGGGGCTACAATACTCAG
AGGAAATTCAAATTCCAAGTGCTCTTACATGCCCAGGACCAATGGATGAG
GCCACAACATCTGCTCCAACAACCAGAATTACTGGGACTCCTGAGATTCA
GGGACAGAGGAACTCCAACCCAGCCAGAGGCACGGGTTCATTTCGGTTTG
AACCTGCACACAGAGCAAATCTGGTGTGTTGGCTCTGCAATCACGCCTAC
AACACCCAAAGGGAGTCTGGCTCCCAGGTTCTCTGAAACTTTCAGGATCA
CAGGATCATAGGTGCTCTAATATGCCCAGCCACAGGATCACCAGATCATA
GAGGAAGATTATGTCAACTCCCAGGAGATTGGACACACCCAGAATCACTA
GAGCTCTGACACACTCAAGATAATTGTTGAAGCCACATCTTTCCAAACAC
CCAGCATAACTGGGATCCCCATAGGAACCAGGAAAACACACTCCCCCACC
AAGCCAGAGACACAGGCTCCTTTCAGTTTGCACCTGTGCTGGGAGCAGAC
CCAGGGTCTGGCTCCTTATCAACTCTTGCAACCCAGAAAAACCTTGACTC
CCAGGAAATCTGACCCAACAGGATCTTAGAAGCTTGATCACACCAGAATT
TCAGGATCCCCAGGGCAGTTTGACCCCCAGGAGGTCTGAAACCCCCAGAC
ATTCGGGACCCCGGAACTCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_p13.b1 MSMg01no337_p13.b1 CHROMAT_FILE:
MSMg01no337_p13.b1 PHD_FILE: MSMg01no337_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:30 2005
         (605 letters)



>mm_chr2_36132264_36133268
          Length = 1005

 Score = 1147 bits (593), Expect = 0.0
 Identities = 599/601 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacattcaataatatacagagctagagttgcagatggatgaggcttctaggtagc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacattcaataatatacagagctagagttgcagatggatgaggcttctaggtagc 264

                                                                       
Query: 65  agagagtcagcaataaacatgagctctaaatagtatcattaaataagagtgatcttatac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agagagtcagcaataaacatgagctctaaatagtatcattaaataagagtgatcttatac 324

                                                                       
Query: 125 taaaccatttcttccaagctaggcattgttagaatgaaagggtctgttttgtactccatc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taaaccatttcttccaagctaggcattgttagaatgaaagggtctgttttgtactccatc 384

                                                                       
Query: 185 tgctttatagtcaattgcttcatggcttggttaggacattttgaaaataacaatcaactt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgctttatagtcaattgcttcatggcttggttaggacattttgaaaataacaatcaactt 444

                                                                       
Query: 245 agactactttccctttgaaattcacataggaagttcaggcacagagagaatgctaacgaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agactactttccctttgaaattcacataggaagttcaggcacagagagaatgctaacgaa 504

                                                                       
Query: 305 gacaatccacatttccaagctatactcatgcctagcattgttaggaaatctgagtaataa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gacaatccacatttccaagctatactcatgcctagcattgttaggaaatctgagtaataa 564

                                                                       
Query: 365 ggaattcagaagtatgctttagtttatattttggaaggtaacctagcaaaagggtttaag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggaattcagaagtatgctttagtttatattttggaaggtaacctagcaaaagggtttaag 624

                                                                       
Query: 425 agcacaaactctaggatccgagtttgaatcctagttccttattcaccatatggatcttaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agcacaaactctaggatccgagtttgaatcctagttccttattcaccatatggatcttaa 684

                                                                       
Query: 485 acatattattttacttcttgttgactctgtcatttctcttgtacagtttagtggggtggt 544
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 685 acatattattttacttcttgttgattctgtcatttctcttgtacagtttagtggggtggt 744

                                                                       
Query: 545 atggaaggtaaatgtaccgatgaacataaattattcaatacagcatctggcatgttgaaa 604
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atggaaggtaaatgtactgatgaacataaattattcaatacagcatctggcatgttgaaa 804

            
Query: 605 a 605
           |
Sbjct: 805 a 805


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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