TCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAATGTCCTTCTCTATATTATCTTATCTGTTTTAGTTTGAAGTTTGC
TACAACTTCTCTTTGTTTGGTAATCTTTTTATGTTGCCATTTACAATGTT
GGAATATCTTTTCCGATCTTTGTGTCCTTTTTGGAAAACCAGATAACTAG
ATCATGTTTTCTAATTTATCATGTTAGTTTTCTTTAGGTAATTGAAAAGT
TAGGCCGGGCATGGTGAAAAGTTAGGAATATTTGCATTCAGAGTTATAAT
TGAGAAATATTTTCCATTGTTTAGTTTCTACTGTTTGTTGTTATGGTTAG
TTGGTTGGTTGGTAATTCTTTTCTTCTTCTCCAAGTAATTTTAGATGTTA
AGCGATATACTTTATTGGACATGATTCTTCCTTCCCTGTTCTCAGTTTCT
TCCATTATTTCCATAAATTGTATTTTAACGATCAATACTATGTGTAATAT
TGCCCTTCTGTCCATAGCATTCAAGAATTTCCCAGCAGTGCAGGATTAGT
TGTCATACTAAGCTTGTGTTTGTCCTGAAATAATTGTAATTCTATANTTT
CATAGGTAATTTGTCCTAGTATAGTAACTTGATTTACACTATTTCAAAGC
AAGTTATATATTATTGTGGACTTCTTAGNNATTTTTTTGATTTAATATTC
TGAAAGTTCGGCCTCTGTATGAAAGAGGATATTTTTCTCTTTCCCTT

ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTGATCTTTTCAAAATTTATCATGAATGG
GTGTTGGACTTTGTCAAATGCTTTCTCAGCATCTAATGAAATGATCATGT
GTTTTTTTTGTCTTTGAGTTTGTTTATATATTGGATTAAGTTGATAGATT
TTCATATATTGAACCATCCTTTCATCCATCATGATCCCTTCTTGATCATG
ATGGATGACCATTTTGATGTATTCTTGGATTCAGTTAGTGAAAATTTTAT
TGAGTATTTTTGCATCGATATTCATAAGGGAAATCAGACTGAAGTTCTCT
TTCTTTTTGGGGTCTTTATGTGAGTAATACATAAAGTATCAGAGTAATTG
GGGCATCATAGAATGAATTGGGTAGAGTACCTTCTATTTCTATTTTTGGA
ATAGTTTGAGTAGTATTGGAATTAGGTCTTCTTTGAAGGGCTGATAGGAC
TCTGCACTAAACCTATCTGGTCATGGACTTTTTGTTGTTGTTGTTGTTGG
GAGACTATTAATGACTGTTTCTATTTCTTTAGGAGATATGAGACTGTTTA
GATAGTTAATCCTGATTTAACCTTGGTACCTGGTATTTGTCTAGAAAATT
GTTCATTTCATCCAGGTTTTCTAGTTTTGTTGAGTATAGGCTTTTGTAGT
ATAATCTAATGATGTTTTGGATTTCTCCGATACTGG

Query= MSMg01no338_p21.b1 MSMg01no338_p21.b1 CHROMAT_FILE:
MSMg01no338_p21.b1 PHD_FILE: MSMg01no338_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:44 2005
         (563 letters)



>mm_chr2_40508622_40509584
          Length = 963

 Score = 1029 bits (532), Expect = 0.0
 Identities = 553/560 (98%), Gaps = 2/560 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaatgtccttctctatattatcttatctgttttagtttgaagtttgctacaactt 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 gaattcaatgtccttctttatattatcttatctgttttagtttgaagtttgctacaactt 704

                                                                       
Query: 65  ctctttgtttggtaatctttttatgttgccatttacaatgttggaatatcttttccgatc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 ctctttgtttggtaatctttttatgttgccatttacaatgttggaatatcttttccgatc 644

                                                                       
Query: 125 tttgtgtcctttttggaaaaccagataactagatcatgttttctaatttatcatgttagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 tttgtgtcctttttggaaaaccagataactagatcatgttttctaatttatcatgttagt 584

                                                                       
Query: 185 tttctttaggtaattgaaaagttaggccgggcatggtgaaaagttaggaatatttgcatt 244
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 583 tttctttaggtaattgaaaagttaggccgggcatggttaaaagttaggaatatttgcatt 524

                                                                       
Query: 245 cagagttataattgagaaatattttccattgtttagtttctactgtttgttgttatggtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 cagagttataattgagaaatattttccattgtttagtttctactgtttgttgttatggtt 464

                                                                       
Query: 305 agttggttggttggtaattcttttcttcttctccaagtaattttagatgttaagcgatat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 agttggttggttggtaattcttttcttcttctccaagtaattttagatgttaagcgatat 404

                                                                       
Query: 365 actttattggacatgattcttccttccctgttctcagtttcttccattatttccataaat 424
           ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||
Sbjct: 403 actttattggacatgattcttccttccctgttctcggtttcttccattattcccatgaat 344

                                                                       
Query: 425 tgtattttaacgatcaatactatgtgtaatattgcccttctgtccatagcattcaagaat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tgtattttaacgatcaatactatgtgtaatattgcccttctgtccatagcattcaagaat 284

                                                                       
Query: 485 ttcccagcagtgcaggattagttgtcatactaagcttgtgtttgtcctgaaataattgta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ttcccagcagtgcaggattagttgtcatactaagcttgtgtttgtcctgaaataattgta 224

                               
Query: 545 attctatantttca-taggt 563
           |||||||| ||||| |||||
Sbjct: 223 attctata-tttcaataggt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space:   527009
Effective search space used:   527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)