BAC Information

Click to search

BAC

Clone NameMSMg01-340C05
Chromosome2 (Build37)
Map Location 154,915,424 - 155,087,314
singlet/doubletdoublet
Overlap geneItch, LOC100043877, LOC668931, Dynlrb1
Upstream gene1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy
Downstream geneMap1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-340C05.T7 (MSMg01no340_c05.b1)MSMg01-340C05.TJ (MSMg01no340_c05.g1)
ACCAG454251AG454252
length740741
length of high quality
(start - end)		552 (44 - 595)550 (78 - 627)
definitionCHROMAT_FILE: MSMg01no340_c05.b1 PHD_FILE: MSMg01no340_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:06 2005CHROMAT_FILE: MSMg01no340_c05.g1 PHD_FILE: MSMg01no340_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,915,424 - 154,915,967)(155,086,985 - 155,087,314)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAGGACAGCGTGGCCTATACAGAGAAACCCTGTCTCAAACAAACAAA
CAAAACAAAACAAAAAAAAAGAAAGGTGGCAGCTATGCATCCCAGAGCAC
CCAGAGCTTGGTCCCCAGACCCACCAACCTTTTCTGGATCAGCATACGGT
GGCCAAGCTGCACTGCATGACCTCATCCACCCAGAGGGCCAGAGTGCTCT
GTGAAACCTGCTCTGGTGGCAAAGGAGATCAAGGAGTTCAAAATCCAGCA
CTGCAGGCACTGCGGAGATGGCTCTGCAGTTAAGAGCACTGGCTGATCTT
CCAAAAGCCCTGGCTTGGGTTCCTAGGCCCTTCATGGTGGCTCACACCAT
CTGAATCTCTGGGGGATGGGGGTATGATGCCCTCTCCTGACCTCCATTGG
CACCAAGCACACAAGTGGTACACATACATACATACATACATACATACATA
CATACATACATACATACATACCAAAAGACAAAAACAGGAACAAAAAACAA
ACATAAAAAACCAATTCATATACATAAAATGTGGGGGATAGGGAGGTGGG
TAGGTTCAAGACAGGGCTTCTCAGTGTGACTAGCCCTGGGCTATTCTGAA
CTTGGTTTTGTGAACCTGGTTGTGCCTCAAATTCACAGAGATCCACCTGT
TCTCTGTCTCCCAATGTGTTGGGTCTTAAAGCGTGGTCCT

NCCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTGTCTTGCTCCTGATCTTAGTG
GAAATGCTTTTTGAGTTTTTCTCAATTTAAGATATTGTATATTGTCCACA
GCCTAGATTTTTGTGTATATTGTTGTGTTGAGATATGTCCCCTGTATCCC
TGCTCTCTTAGTGAATGGATGTTGGATTTTGTTAAAGGCCTTTTCTGCCT
CTAATGAGATGTCTGTTATGTGGTGAATTGTGGTTATATGTTGAACCATC
TAACTCAATCATGGTAGATAATCTTTTGATATGTTCTGGAATTCAGTTTG
TTAGTATCTTGTTGAGAAATTTTGTATCTATTCATCAGAGATAGTGGCCT
GTAATTTTTTTTTCTTTTCCTTTTTGGTTGTTTTTGGTATCATGGTAATA
TTGGCTTTGTAGAGGGAATTTGGAAATGTTCCTTCCTTTTCTATTTTGGT
TGTTTTTGTTGTTGTTTGTTTTGTTTTGTTTTAAACAGCGGAACTACAGG
GCATGGTGGCACACCCTTTACTTTTATCCCCTCTTTTTTCCCCCCTTAGG
TTTTATTTATTTTATGTATATGAGAACACTCTGTCATCAAACACACCAAA
ATAGGGTAGCCAATTCCATTACAGATAGTTTGTGAGATGTGATTGCTGGG
AATTTAACTCCTGACCTCNCCTAATTCTTTATATACTCAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no340_c05.b1 MSMg01no340_c05.b1 CHROMAT_FILE:
MSMg01no340_c05.b1 PHD_FILE: MSMg01no340_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:06 2005
         (552 letters)



>mm_chr2_154915220_154916171
          Length = 952

 Score = 1025 bits (530), Expect = 0.0
 Identities = 542/548 (98%), Gaps = 4/548 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaggacagcgtggcctatacagagaaaccctgtctcaaacaaacaaacaaaaca 64
           |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggacagcgagggctatacagagaaaccctgtctcaaacaaacaaacaaaaca 264

                                                                       
Query: 65  aaacaaaaaaaaagaaaggtggcagctatgcatcccagagcacccagagcttggtcccca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaacaaaaaaaaagaaaggtggcagctatgcatcccagagcacccagagcttggtcccca 324

                                                                       
Query: 125 gacccaccaaccttttctggatcagcatacggtggccaagctgcactgcatgacctcatc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gacccaccaaccttttctggatcagcatacggtggccaagctgcactgcatgacctcatc 384

                                                                       
Query: 185 cacccagagggccagagtgctctgtgaaacctgctctggtggcaaaggagatcaaggagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cacccagagggccagagtgctctgtgaaacctgctctggtggcaaaggagatcaaggagt 444

                                                                       
Query: 245 tcaaaatccagcactgcaggcactgcggagatggctctgcagttaagagcactggctgat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcaaaatccagcactgcaggcactgcggagatggctctgcagttaagagcactggctgat 504

                                                                       
Query: 305 cttccaaaagccctggcttgggttcctaggcccttcatggtggctcacaccatctgaatc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cttccaaaagccctggcttgggttcctaggcccttcatggtggctcacaccatctgaatc 564

                                                                       
Query: 365 tctgggggatgggggtatgatgccctctcctgacctccattggcaccaagcacacaagtg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tctgggggatgggggtatgatgccctctcctgacctccattggcaccaagcacacaagtg 624

                                                                       
Query: 425 gtacacatacatacatacatacatacatacatacatacatacatacatacataccaaaag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||
Sbjct: 625 gtacacatacatacatacatacatacatacatacatacatacatacatac----caaaag 680

                                                                       
Query: 485 acaaaaacaggaacaaaaaacaaacataaaaaaccaattcatatacataaaatgtggggg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acaaaaacaggaacaaaaaacaaacataaaaaaccaattcatatacataaaatgtggggg 740

                   
Query: 545 atagggag 552
           ||||||||
Sbjct: 741 atagggag 748


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no340_c05.g1 MSMg01no340_c05.g1 CHROMAT_FILE:
MSMg01no340_c05.g1 PHD_FILE: MSMg01no340_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:06 2005
         (550 letters)



>mm_chr2_155086365_155087314
          Length = 950

 Score =  638 bits (330), Expect = 0.0
 Identities = 330/330 (100%)
 Strand = Plus / Minus

                                                                       
Query: 221 atctaactcaatcatggtagataatcttttgatatgttctggaattcagtttgttagtat 280
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950 atctaactcaatcatggtagataatcttttgatatgttctggaattcagtttgttagtat 891

                                                                       
Query: 281 cttgttgagaaattttgtatctattcatcagagatagtggcctgtaatttttttttcttt 340
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 cttgttgagaaattttgtatctattcatcagagatagtggcctgtaatttttttttcttt 831

                                                                       
Query: 341 tcctttttggttgtttttggtatcatggtaatattggctttgtagagggaatttggaaat 400
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 tcctttttggttgtttttggtatcatggtaatattggctttgtagagggaatttggaaat 771

                                                                       
Query: 401 gttccttccttttctattttggttgtttttgttgttgtttgttttgttttgttttaaaca 460
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 gttccttccttttctattttggttgtttttgttgttgtttgttttgttttgttttaaaca 711

                                                                       
Query: 461 gcggaactacagggcatggtggcacaccctttacttttatcccctcttttttcccccctt 520
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 gcggaactacagggcatggtggcacaccctttacttttatcccctcttttttcccccctt 651

                                         
Query: 521 aggttttatttattttatgtatatgagaac 550
           ||||||||||||||||||||||||||||||
Sbjct: 650 aggttttatttattttatgtatatgagaac 621


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |