BAC Information

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BAC

Clone NameMSMg01-340D24
Chromosome2 (Build37)
Map Location 110,648,795 - 110,649,373
singlet/doubletsinglet
Overlap genenone
Upstream geneLin7c, Lgr4, Ccdc34, LOC668797, Bbox1, 1110018M03Rik, LOC668799, Slc5a12, Muc15
Downstream geneLOC668802, LOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-340D24.T7 (MSMg01no340_d24.b1)MSMg01-340D24.TJ (MSMg01no340_d24.g1)
ACCAG454335AG454336
length735607
length of high quality
(start - end)		584 (49 - 632)---
definitionCHROMAT_FILE: MSMg01no340_d24.b1 PHD_FILE: MSMg01no340_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:14 2005CHROMAT_FILE: MSMg01no340_d24.g1 PHD_FILE: MSMg01no340_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTTTAATTTCACAGATGAGAGTATTGCATGGGCTGCAGAGC
AGGCAGATATGTTGGAGTTGTTCTTTAATGAGCTGAGTAAGAGATTCTAA
TTCTCCCTGGTTAAATGTCAATGTTCAACTCAGATGAACTCGTTTAAGAC
TCACTTGAGGCAGGGATTATCTAACAGTGGCTCTTAGAATTGTGGGTGAC
TCCTGAGAGGGTATTTGTTGTAGTCCTCTATCTGGATGCATTCATTTTCC
ATGGTATGGGAAAAGACTATATATAGGACTTCTAAGATACCTCTCCTCAA
CAGATTGTTGGCCATCTCCACTTTAACATGTCTGAACCTCTCATTTGAAG
GACTATTTAGTGGTATATACCCAAAAGGAGTCTCATATGCCAATTAGTTG
GAGCTCAGGGATTAGTTTCTAATACTGTCAGACCTCAGATCATTGTATAA
GAGTTCTGTCTGCTCTAGTGTCAACTGGGCATTTAAATGTTTTTTCCCCC
AATTTTTATATTGAGTTTGGGCCGTGAGCCTTCCAAAATGTCAGTGACTC
TCTAGATTTTGGGGGTTTTCTCTCTTATTGTTGGGGTTGAGTGTTGTCCC
TTTTGGAGTTTAAAGCTCAAGTTGCCATTTTTATCAAATGTGNAAAGAAA
ACTCTTTTTCTAATGCAATTCTTTGTGGCATCAGG

TTGGAGGCTGCGGCGCTGGCTTCAATTAGGGACCTATGAGGATCGCGATT
CAGATGAACTTGAAGAGCTGAGTAAAGNGTCAGTGAAGGCCNGATGGATC
AGTTAGGGGATTCCATAGCTGACCTATTATGAGTCTATGAGGGCCCCTAA
AGAATTACTTGATTGCCCTGAAAACCCAAACCCTTAAAAACCCAAGGAAT
TTTTGGCCCCCCGGGGAAAAAAGTGCCCCCGTTTTAATTTTGGGGGGGAA
AAATTTGGGGGAACCCTTTAGGGGACCCCCTTTTTTTTGGCCCCCTGTTT
TTTAACCCCCCCCAAAAAAAAAACCCTTTTTTTGCCCCCCACAAAAAAAA
ATTTTTTTTTTTTTTAAAAAAACCCCCCCAAAAGGGGGCCCAAATAAAAA
AAAAAGGGGGGGGGGCTTTTTTGTTGTGGGGGGGGGGGGGGGNTTTNNNT
NCTCNNTCCCCCTCTACTCTCCCTTTCTCCCCTCNTCCCCTCCCTCCTCT
CCCTCCTTCCTCCTCTCCCTCCCTCTTCCCTTCCCCTCCCCTTCCCCCCT
TCTCTCCTCTCCTTCCCTCCTCCCCCCTCCTCTTCCTTTATTTTTGTTAG
GGTGGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no340_d24.b1 MSMg01no340_d24.b1 CHROMAT_FILE:
MSMg01no340_d24.b1 PHD_FILE: MSMg01no340_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:14 2005
         (584 letters)



>mm_chr2_110648591_110649573
          Length = 983

 Score = 1075 bits (556), Expect = 0.0
 Identities = 574/580 (98%), Gaps = 1/580 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttttaatttcacagatgagagtattgcatgggctgcagagcaggcagatatgt 64
           ||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 783 gaattctttttaattgcaaagatgagagtattgcatgggctgcagagcaggcacatatgt 724

                                                                       
Query: 65  tggagttgttctttaatgagctgagtaagagattctaattctccctggttaaatgtcaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 tggagttgttctttaatgagctgagtaagagattctaattctccctggttaaatgtcaat 664

                                                                       
Query: 125 gttcaactcagatgaactcgtttaagactcacttgaggcagggattatctaacagtggct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 gttcaactcagatgaactcgtttaagactcacttgaggcagggattatctaacagtggct 604

                                                                       
Query: 185 cttagaattgtgggtgactcctgagagggtatttgttgtagtcctctatctggatgcatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 cttagaattgtgggtgactcctgagagggtatttgttgtagtcctctatctggatgcatt 544

                                                                       
Query: 245 cattttccatggtatgggaaaagactatatataggacttctaagatacctctcctcaaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 cattttccatggtatgggaaaagactatatataggacttctaagatacctctcctcaaca 484

                                                                       
Query: 305 gattgttggccatctccactttaacatgtctgaacctctcatttgaaggactatttagtg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gattgttggccatctccactttaacatgtctgaacctctcatttgaaggactatttagtg 424

                                                                       
Query: 365 gtatatacccaaaaggagtctcatatgccaattagttggagctcagggattagtttctaa 424
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 423 gtatatacccaaaaggagtctcgtatgccaattagttggagctcagggattagtttctaa 364

                                                                       
Query: 425 tactgtcagacctcagatcattgtataagagttctgtctgctctagtgtcaactgggcat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tactgtcagacctcagatcattgtataagagttctgtctgctctagtgtcaactgggcat 304

                                                                       
Query: 485 ttaaatgttttttcccccaatttttatattgagtttgggccgtgagccttccaaaatgtc 544
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ttaaatgttttt-cccccaatttttatattgagtttgggccgtgagccttccaaaatgtc 245

                                                   
Query: 545 agtgactctctagattttgggggttttctctcttattgtt 584
           ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 244 agtgactctctagattttgtgggttttctctcttattgtt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 983
Length adjustment: 10
Effective length of query: 574
Effective length of database: 973
Effective search space:   558502
Effective search space used:   558502
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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