Query= MSMg01no340_e14.b1 MSMg01no340_e14.b1 CHROMAT_FILE:
MSMg01no340_e14.b1 PHD_FILE: MSMg01no340_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:17 2005
(577 letters)
>mm_chr2_74270187_74271158
Length = 972
Score = 1077 bits (557), Expect = 0.0
Identities = 567/573 (98%), Gaps = 5/573 (0%)
Strand = Plus / Plus
Query: 5 gaattcttcacttctttacttttcaatggcactacccacccatctgtggcatccactctg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcacttctttacttttcaatggcactacccacccatctgtggcatccactctg 264
Query: 65 taaaagctgtagtaacacactggtcctcttggtctccctcattctcctcaaaaatcacct 124
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taaaagctgtaggaacacactggtcctcttggtctccctcattctcctcaaaaatcacct 324
Query: 125 tgctcttcccctgcttctaacatcttggctgtcatcttacccctcgctcttcaccttggc 184
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 325 tgctcttcccctgcttctaacatcttggctgtcatcttacccctc-----tcaccttggc 379
Query: 185 ttactgccattcaaaataggacctcatccgaggtttgtatgagaatctggcccattgatt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttactgccattcaaaataggacctcatccgaggtttgtatgagaatctggcccattgatt 439
Query: 245 gcctttacagttgtgtgtagtgaggatcagcatattgaaattagggcagaacacacaaac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gcctttacagttgtgtgtagtgaggatcagcatattgaaattagggcagaacacacaaac 499
Query: 305 acctattttgtgaattctgctcagaggagctgcaagctgggagctgagctatgactgtcc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 acctattttgtgaattctgctcagaggagctgcaagctgggagctgagctatgactgtcc 559
Query: 365 tctctgtcatgtgaagcacacatatccttctgtgatggtttgaatagtaatggctcccac 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tctctgtcatgtgaagcacacatatccttctgtgatggtttgaatagtaatggctcccac 619
Query: 425 agaggtgtttgaaggcttggtctgtagggagtggcactattaggaggtgtggccttgttg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agaggtgtttgaaggcttggtctgtagggagtggcactattaggaggtgtggccttgttg 679
Query: 485 gagaaagtgtgtcactattgggaccagctttgaggtctcacgtgttcaagctacacccag 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gagaaagtgtgtcactattgggaccagctttgaggtctcacgtgttcaagctacacccag 739
Query: 545 tgtggctcacagtctccttctgctgcctgtgga 577
|||||||||||||||||||||||||||||||||
Sbjct: 740 tgtggctcacagtctccttctgctgcctgtgga 772
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 972
Length adjustment: 10
Effective length of query: 567
Effective length of database: 962
Effective search space: 545454
Effective search space used: 545454
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no340_e14.g1 MSMg01no340_e14.g1 CHROMAT_FILE:
MSMg01no340_e14.g1 PHD_FILE: MSMg01no340_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:17 2005
(564 letters)
>mm_chr2_74440230_74441193
Length = 964
Score = 967 bits (500), Expect = 0.0
Identities = 543/564 (96%), Gaps = 13/564 (2%)
Strand = Plus / Minus
Query: 1 tgcagttgcagcagagctcagccaatgagctgtagcagagctcagccatggcgcacatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 tgcagttgcagcagagctcagccaatgagctgtagcagagctcagccatggcgcacatgc 536
Query: 61 ttatcacacatgaggcctttagtctgatctgtatttcccagcccctaccacagaagaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ttatcacacatgaggcctttagtctgatctgtatttcccagcccctaccacagaagaaga 476
Query: 121 ggcaggcagaactcctgatgtctgatatttgatatctgtttgataattagcaactaaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ggcaggcagaactcctgatgtctgatatttgatatctgtttgataattagcaactaaaac 416
Query: 181 ctctaaacaaaacccataaaacagctgcctggagactttataaagagtaaagcaggtagg 240
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 415 ctctaaacaaaacccgtaaaacagctgtctggagactttataaagagtaaagcaggtagg 356
Query: 241 tgggaaatgctggagaggtgagctattcagagatgagtttctcatttcctcccattttta 300
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 355 tgggaaatgctggagaggtgagctattcaggggtgagtttctcatttcctcccattttta 296
Query: 301 ctcacagtcttaagccaaaggctcttacagttacaattccgagattctagtttctgttca 360
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 295 ctcacagtcttaagccaaaggctcttacagttacaattctgagattctagtttctgttca 236
Query: 361 gaagtctgggaaaaggactgcttacaggccagactacaggccagactgcgtggggtaact 420
|||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 235 gaagtctgggaaaaggactg-tt-----------tacaggccagactgcgtggggtaact 188
Query: 421 ttttttttttcttggctaatcaaaggcagacagtggaggtgtgtctgtgttcttccttgt 480
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 187 ctttttttt-cttggctaatcaaaggcagacagcggaggtgtgtctgtgttcttccttgt 129
Query: 481 tctctgatcagaggagctgagaaacagggatgtattcgctcttagagagttcatagttct 540
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 tctctgatcagaggagttgagaaacagggatgtattcgctcttagagagttcatagttct 69
Query: 541 gaaaaccattcttttatctcttgc 564
||||||||||||||||||||||||
Sbjct: 68 gaaaaccattcttttatctcttgc 45
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space: 528516
Effective search space used: 528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
