Query= MSMg01no340_f08.b1 MSMg01no340_f08.b1 CHROMAT_FILE:
MSMg01no340_f08.b1 PHD_FILE: MSMg01no340_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:20 2005
(574 letters)
>mm_chr2_145696312_145697285
Length = 974
Score = 980 bits (507), Expect = 0.0
Identities = 507/507 (100%)
Strand = Plus / Minus
Query: 1 gctagagaaatcctgttgacctgttgaaaagaaagaatgaaccaaagaactgtttgaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gctagagaaatcctgttgacctgttgaaaagaaagaatgaaccaaagaactgtttgaact 448
Query: 61 gtaatattttggaccttgaaaactgtatattagctgtagcctctgaatgacccaaactgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gtaatattttggaccttgaaaactgtatattagctgtagcctctgaatgacccaaactgg 388
Query: 121 aaacaaggtttatgaaagcaggggtccaatcaactggtcccatagactatccctaagtgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aaacaaggtttatgaaagcaggggtccaatcaactggtcccatagactatccctaagtgg 328
Query: 181 gaggcagcaaagactatgttggttctccttgtctcattgctaactaatgcagtaattgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gaggcagcaaagactatgttggttctccttgtctcattgctaactaatgcagtaattgat 268
Query: 241 aaaaaaatattcaatgtgttggcctttaggcaacaattgattcactctctatgaagaaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aaaaaaatattcaatgtgttggcctttaggcaacaattgattcactctctatgaagaaac 208
Query: 301 agagacagggactagagagatggctctggttaagagcactgactgctcttccagaggtcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 agagacagggactagagagatggctctggttaagagcactgactgctcttccagaggtcc 148
Query: 361 tgagttcaattcccagccaccacatggtggctcacaaccatctgtaatgggatttgatgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 tgagttcaattcccagccaccacatggtggctcacaaccatctgtaatgggatttgatgc 88
Query: 421 tgtctttttgtgtgtctgaagacagctacagtgtactcatatacataataaataaataaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 tgtctttttgtgtgtctgaagacagctacagtgtactcatatacataataaataaataaa 28
Query: 481 tctttaaaaaagagaaagaaaggaaga 507
|||||||||||||||||||||||||||
Sbjct: 27 tctttaaaaaagagaaagaaaggaaga 1
Score = 116 bits (60), Expect = 4e-30
Identities = 63/64 (98%)
Strand = Plus / Plus
Query: 508 aggaaagagagagagagagagagagagagagagagagagagagagagagagagagagaga 567
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 aggagagagagagagagagagagagagagagagagagagagagagagagagagagagaga 713
Query: 568 gaga 571
||||
Sbjct: 714 gaga 717
Score = 114 bits (59), Expect = 2e-29
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 513 agagagagagagagagagagagagagagagagagagagagagagagagagagagagaga 571
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 agagagagagagagagagagagagagagagagagagagagagagagagagagagagaga 719
Score = 114 bits (59), Expect = 2e-29
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 513 agagagagagagagagagagagagagagagagagagagagagagagagagagagagaga 571
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 agagagagagagagagagagagagagagagagagagagagagagagagagagagagaga 721
Score = 114 bits (59), Expect = 2e-29
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 513 agagagagagagagagagagagagagagagagagagagagagagagagagagagagaga 571
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 agagagagagagagagagagagagagagagagagagagagagagagagagagagagaga 723
Score = 114 bits (59), Expect = 2e-29
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 513 agagagagagagagagagagagagagagagagagagagagagagagagagagagagaga 571
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 agagagagagagagagagagagagagagagagagagagagagagagagagagagagaga 725
Score = 107 bits (55), Expect = 3e-27
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 513 agagagagagagagagagagagagagagagagagagagagagagagagagagagagaga 571
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 673 agagagagagagagagagagagagagagagagagagagagagagagagagagaaagaga 731
Score = 107 bits (55), Expect = 3e-27
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 513 agagagagagagagagagagagagagagagagagagagagagagagagagagagagaga 571
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 675 agagagagagagagagagagagagagagagagagagagagagagagagagaaagagaga 733
Score = 99.3 bits (51), Expect = 7e-25
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 513 agagagagagagagagagagagagagagagagagagagagagagagagagagagagaga 571
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 681 agagagagagagagagagagagagagagagagagagagagagagaaagagagaaagaga 739
Score = 99.3 bits (51), Expect = 7e-25
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 513 agagagagagagagagagagagagagagagagagagagagagagagagagagagagaga 571
||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 683 agagagagagagagagagagagagagagagagagagagagagaaagagagaaagagaga 741
Score = 99.3 bits (51), Expect = 7e-25
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 513 agagagagagagagagagagagagagagagagagagagagagagagagagagagagaga 571
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 685 agagagagagagagagagagagagagagagagagagagagaaagagagaaagagagaga 743
Score = 99.3 bits (51), Expect = 7e-25
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 513 agagagagagagagagagagagagagagagagagagagagagagagagagagagagaga 571
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 687 agagagagagagagagagagagagagagagagagagagaaagagagaaagagagagaga 745
Score = 99.3 bits (51), Expect = 7e-25
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 513 agagagagagagagagagagagagagagagagagagagagagagagagagagagagaga 571
||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 689 agagagagagagagagagagagagagagagagagagaaagagagaaagagagagagaga 747
Score = 99.3 bits (51), Expect = 7e-25
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 513 agagagagagagagagagagagagagagagagagagagagagagagagagagagagaga 571
||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 691 agagagagagagagagagagagagagagagagagaaagagagaaagagagagagagaga 749
Score = 99.3 bits (51), Expect = 7e-25
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 513 agagagagagagagagagagagagagagagagagagagagagagagagagagagagaga 571
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 693 agagagagagagagagagagagagagagagagaaagagagaaagagagagagagagaga 751
Score = 99.3 bits (51), Expect = 7e-25
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 513 agagagagagagagagagagagagagagagagagagagagagagagagagagagagaga 571
||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 695 agagagagagagagagagagagagagagagaaagagagaaagagagagagagagagaga 753
Score = 97.4 bits (50), Expect = 3e-24
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 513 agagagagagagagagagagagagagagagagagagagagagagagagagagagagag 570
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 697 agagagagagagagagagagagagagagaaagagagaaagagagagagagagagagag 754
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 128
Number of extensions: 38
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 22
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space: 543696
Effective search space used: 543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no340_f08.g1 MSMg01no340_f08.g1 CHROMAT_FILE:
MSMg01no340_f08.g1 PHD_FILE: MSMg01no340_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:20 2005
(508 letters)
>mm_chr2_145518025_145518927
Length = 903
Score = 855 bits (442), Expect = 0.0
Identities = 490/508 (96%), Gaps = 5/508 (0%)
Strand = Plus / Plus
Query: 1 aggacctctggaagggcagtcacatcacccaactttacagaaaagtacattgaatctgaa 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 aggacctctggaagggcagtcacatcacccaactttacagaaaagtatattgaatctgaa 260
Query: 61 aaagtcaagctaaatgtagtttctttcattgagcacccttaggtttggtgtgtcttagac 120
||| ||||| |||||| |||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 261 aaaatcaag-taaatgcagtttccttcatggagcacccttaggtttggtgtgtcttagac 319
Query: 121 catggaaggaacttagcctgcttaattccctgggtgttgggggggggggtccccacactg 180
|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 320 catggaaggaacttagcctgcttaattccctgggtgttggagggg----tccccacactg 375
Query: 181 ttttgtgatgtaagtgccttgttcccccacgtcccagatggaaacttcccagtgagcaaa 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 376 ttttgtgatgtaagtgccttgttcccccacttcccagatggaaacttcccagtgagcaaa 435
Query: 241 atctccaagagcttgggtaaactccttccagattgcaagcataggatatggaggtgcaac 300
||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 436 atcgccaagagcttgggtgaactccttccagattgcaagcataggacatggaggtgcaac 495
Query: 301 tagggctgatggctacaaaggctggctcagaagcccagggtggacttcccctgacacttc 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tagggctgatggccacaaaggctggctcagaagcccagggtggacttcccctgacacttc 555
Query: 361 ctagtgtgcgggtcccgtgagttctttttgaggatgcatttgtgatttatgcatagaaag 420
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ctagtgtgcgggccccatgagttctttttgaggatgcatttgtgatttatgcatagaaag 615
Query: 421 cacttacctgggatctggggttcaccagttaggctaggctggctggccaacgagccccaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 cacttacctgggatctggggttcaccagttaggctaggctggctggccaacgagccccaa 675
Query: 481 gagtcttcaccacgtttccacttcctca 508
||||||||||||||||||||||||||||
Sbjct: 676 gagtcttcaccacgtttccacttcctca 703
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 903
Length adjustment: 10
Effective length of query: 498
Effective length of database: 893
Effective search space: 444714
Effective search space used: 444714
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
