Query= MSMg01no340_g17.b1 MSMg01no340_g17.b1 CHROMAT_FILE:
MSMg01no340_g17.b1 PHD_FILE: MSMg01no340_g17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:26 2005
(658 letters)
>mm_chr2_123441852_123442910
Length = 1059
Score = 1245 bits (644), Expect = 0.0
Identities = 653/656 (99%), Gaps = 1/656 (0%)
Strand = Plus / Minus
Query: 4 ggaattctgactggattctatagaaatgaag-aacaagacactgacaaaaagacacatac 62
||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 859 ggaattctgactggaaactatagaaatgaagaaacaagacactgacaaaaagacacatac 800
Query: 63 agagaagctggggataggtgagctgtactcgctttggtagaggatacctgcaagagcaac 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 agagaagctggggataggtgagctgtactcgctttggtagaggatacctgcaagagcaac 740
Query: 123 ccccagactctgcaagtttatgatactcagcacgaagaggagaggtgtgctttgtctcag 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ccccagactctgcaagtttatgatactcagcacgaagaggagaggtgtgctttgtctcag 680
Query: 183 tgaagtctctttggtgtagttgcaggccatatacacatggaggaggaagagccagtggat 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tgaagtctctttggtgtagttgcaggccatatacacatggaggaggaagagccagtggat 620
Query: 243 gctttctgcacatgcatgccagcattcatacttaaaccagggaaagctgtgtcactgccc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gctttctgcacatgcatgccagcattcatacttaaaccagggaaagctgtgtcactgccc 560
Query: 303 tgagcctgacccagggaaggcattgccactttcatgagtctggtgcattgtcattcttga 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tgagcctgacccagggaaggcattgccactttcatgagtctggtgcattgtcattcttga 500
Query: 363 caaggtcatactcaatgtcaacaatgtccattcacttgggactttacccactccctgcaa 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 caaggtcatactcaatgtcaacaatgtccattcacttgggactttacccactccctgcaa 440
Query: 423 aatatgctctggaagaaaattgggagaacaagcagctcactgaaaaccaaacatcatata 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aatatgctctggaagaaaattgggagaacaagcagctcactgaaaaccaaacatcatata 380
Query: 483 ctaactgcagacatccctagttaacttcatgtcttgacaaacaatttataaagcatttaa 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ctaactgcagacatccctagttaacttcatgtcttgacaaacaatttataaagcatttaa 320
Query: 543 tgaatgataaaaatagtccattaaagagaacttccagccctgtcttgagactgtctcaat 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tgaatgataaaaatagtccattaaagagaacttccagccctgtcttgagactgtctcaat 260
Query: 603 gcataaactattatatagctctcccatatggggcagctcacctgtgaagcaggcct 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gcataaactattatatagctctcccatatggggcagctcacctgtgaagcaggcct 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1059
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1049
Effective search space: 679752
Effective search space used: 679752
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no340_g17.g1 MSMg01no340_g17.g1 CHROMAT_FILE:
MSMg01no340_g17.g1 PHD_FILE: MSMg01no340_g17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:26 2005
(577 letters)
>mm_chr2_123262181_123263157
Length = 977
Score = 1108 bits (573), Expect = 0.0
Identities = 576/577 (99%)
Strand = Plus / Plus
Query: 1 actgttaaataagagtcttcatgaaacagctatctttcaataattcgatccatcaggtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgttaaataagagtcttcatgaaacagctatctttcaataattcgatccatcaggtgg 260
Query: 61 gaacaacaatcttcaatttacgtgcttgctatcagtttggatatctcatatctaaaccat 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 gaacaacaatcttcaatttacgtgcttgctatcagtttggacatctcatatctaaaccat 320
Query: 121 aaaagctgtatcctgctcatcaaaggaaatatgatgctgattatacaatttaattttagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaagctgtatcctgctcatcaaaggaaatatgatgctgattatacaatttaattttagt 380
Query: 181 gttagttatgctctcttttgtgtattaatttttattttatttcccagtttcataagtttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttagttatgctctcttttgtgtattaatttttattttatttcccagtttcataagtttt 440
Query: 241 gtggttgtttcatgactcatttatttgtatatatgcatgtttgcatatatataatagaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtggttgtttcatgactcatttatttgtatatatgcatgtttgcatatatataatagaga 500
Query: 301 aacatatgtagccagactttccactactttttgggttcctacttctaccacccttctcct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacatatgtagccagactttccactactttttgggttcctacttctaccacccttctcct 560
Query: 361 tccaacactgcaacactaggtaggagagaaagaatgctagagcatccacttctgtgtttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccaacactgcaacactaggtaggagagaaagaatgctagagcatccacttctgtgtttg 620
Query: 421 ctaggccctggcatagtctcacaagagacagctatatcagggtcctttcagcaaaatctt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctaggccctggcatagtctcacaagagacagctatatcagggtcctttcagcaaaatctt 680
Query: 481 gctagtgtatgcaatggtgtcagcgtttggaggctgattatgggatggatccctgaatat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gctagtgtatgcaatggtgtcagcgtttggaggctgattatgggatggatccctgaatat 740
Query: 541 ggcagtctctagatggtccatccttttgtctctgccc 577
|||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggcagtctctagatggtccatccttttgtctctgccc 777
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space: 548289
Effective search space used: 548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
