BAC Information

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BAC

Clone NameMSMg01-341B17
Chromosome2 (Build37)
Map Location 143,620,144 - 143,620,513
singlet/doubletsinglet
Overlap genePcsk2
Upstream geneKif16b, Snrpb2, Otor, LOC668915, LOC668916
Downstream geneBfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341B17.T7 (MSMg01no341_b17.b1)MSMg01-341B17.TJ (MSMg01no341_b17.g1)
ACCAG454985AG454986
length776804
length of high quality
(start - end)
425 (41 - 465)370 (71 - 440)
definitionCHROMAT_FILE: MSMg01no341_b17.b1 PHD_FILE: MSMg01no341_b17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:16 2005CHROMAT_FILE: MSMg01no341_b17.g1 PHD_FILE: MSMg01no341_b17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TACCCAGTGATTTCCAGAGTGACTGAGCAAGTTTGCAGTCTCACTAACAA
TTCATGAGGGCTCTCTTCTTCTCATATCCCCCCCACCCCCACAGCAATTG
TGATCAGTTGTTCTGTGTCCTTGTCCATTCTGACTTGGGTAAGATGAAAT
AGCAAAGTTGTTCTTAATTTGCATTTTCCTAGTTGCAAGGGCAATAAACA
TTCTTTGAGATGTTTCTTAGCCATTTGTTCTTCTTTTGATAATTATTTGT
TAGGTCACAGGTCTGTTTTTTGAAGAGGTTTTTTGACTCTTTGATTTTTC
AGTTCTTTATATGTTATAGATATTAATTCTCTGTCAGACGAATAGTTGGT
AAAGATTCTCTTCCATTCTGTGGGCTTCCTGTTCACCAGGTTGATTATTT
GTTTATCTCTGCTGTCTGTTTTTAGCTGTCAAATTTTAGTTACCTTAGCT
GTCAATGTAGTCAGAAATCTGGGAAGAAAAACTTTAATCCTTGAATCCCG
TACTTTTCACATTGCCGACGTTTGTTTTTTCCCTCTATCCCTTACTTTTT
CTCATTCCGCCTTTTTTTTCTTTTTTTCCCCATTTTTACCTTTTTCCCCC
CCCTTTGTCTCCATAACTAAATTCTTTTTCCTTCTCCCACTCTTCCTTTT
TTTCTTTTTTTCCACCCCTTTTTTTCCTTCTTTTTTTTTTTTCCTTTTTT
TCCCTCTCCCCCTTTTTTTCCTTCTT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTCAGGAGACTAGGTTAGCTTCAAACTCA
GTGATCCATCCACCTCTGCCTCCCAAGTGTTAGACTTAAAGGTGTGCATC
ACCACCACCCAGCTAAGAGAGCATATTATTTTGAGGAATAAAGGATTGGG
AGGATTTAAAGGTGTCTATTGGGAAAATTACAATATCAGAAAAAGGGGTC
TTCTCTAGGCAAGCACAACAAGGGTCTTAGATAAGGGTTGAAGGCACTTG
GGACCTTTGGGTAAGGGCCAGGCTTCCAGAAGCTAGAGGGAGGTACCACA
CACAGAACAGGTTGGGGGCTGCCCACAACTGTTCCTTTCTGTTTGGCTCT
GGATGAATCAGAGGACTGAAGTCCCATGCTGCTTGAAGGGAATTGGCCTA
TCCTCTTCTTTAATCTTATGAGGACCTCTGAGAGATCATCATTTAAGGGG
CACCCTTCTTCTAGCTTTAACGTTTTTTCCCCCCCTTTCCATTCCTCCAC
CCGACTGTCCACCTTTGATTCACCTTACCCACCGTGTCGCCCCTTGATTC
CCCTTCGTGTCTTAATCGCCCTTTGTCCCCCCCCCCCTTCCCCCTCCTTG
TTTTGTCATTCTCCCTCCCCCTTTTTTTTTTTTTATTCATCTTTCTACCC
TCTTCTCACTTATTTTTTTTCTCCTCCCGCTCTCTTTATGTTTTTTCTTA
TTCTTTTCTTACTTCTGTCCGCGCTTTCTACTCTTCTCTTTTCCTCTTTT
CCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_b17.g1 MSMg01no341_b17.g1 CHROMAT_FILE:
MSMg01no341_b17.g1 PHD_FILE: MSMg01no341_b17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:16 2005
         (370 letters)



>mm_chr2_143619847_143620616
          Length = 770

 Score =  654 bits (338), Expect = 0.0
 Identities = 362/370 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   actcaggagactaggttagcttcaaactcagtgatccatccacctctgcctcccaagtgt 60
           |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 667 actcagtagactaggttagcttcaaactcagtgatccatctacctctgcctcccaagtgt 608

                                                                       
Query: 61  tagacttaaaggtgtgcatcaccaccacccagctaagagagcatattattttgaggaata 120
           |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 607 tagacttaaaggtgtgcaccaccaccacccagctaatagagcatattattttgaggaata 548

                                                                       
Query: 121 aaggattgggaggatttaaaggtgtctattgggaaaattacaatatcagaaaaaggggtc 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 aaggattgggaagatttaaaggtgtctattgggaaaattacaatatcagaaaaaggggtc 488

                                                                       
Query: 181 ttctctaggcaagcacaacaagggtcttagataagggttgaaggcacttgggacctttgg 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 487 ttctctaggcaagcacaacaagggtcttagataagggttgaaggtacttgggacctttgg 428

                                                                       
Query: 241 gtaagggccaggcttccagaagctagagggaggtaccacacacagaacaggttgggggct 300
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 427 gtaagggccaggcttccagaagctagagggaggtaccatacacagaacaggttgggggct 368

                                                                       
Query: 301 gcccacaactgttcctttctgtttggctctggatgaatcagaggactgaagtcccatgct 360
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 367 gcccacaactgttcctttctgtttggctctggatgagtcagaggactgaagtcccatgct 308

                     
Query: 361 gcttgaaggg 370
           ||||||||||
Sbjct: 307 gcttgaaggg 298


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)