Query= MSMg01no341_f08.b1 MSMg01no341_f08.b1 CHROMAT_FILE:
MSMg01no341_f08.b1 PHD_FILE: MSMg01no341_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:33 2005
(277 letters)
>mm_chr2_8665162_8665838
Length = 677
Score = 346 bits (179), Expect = e-100
Identities = 229/273 (83%), Gaps = 44/273 (16%)
Strand = Plus / Minus
Query: 4 ggaattccaagttcatagaaaggcaaggaaagagagttcctagcagtaattaaaaagaat 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ggaattccaagttcatagaaaggcaaggaaagagagttcctagcagtaattaaaaagaat 252
Query: 64 tataattgtaaaacttggagatgcatgtttaaaactcaaagacctgaatctctctctcaa 123
|||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 251 tataattgtaaaacttggagatgcatgtttaaaactcaaagacctg------------aa 204
Query: 124 tctctctctctctctctctctctctctctctctctctctctctctctctctctctctctc 183
|||||||||||||||||||||||||||||||||
Sbjct: 203 tctctctctctctctctctctctctctctctct--------------------------- 171
Query: 184 cctctctctctctctctctctctctctttcatacacacacacacacacacacacacacac 243
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 170 -ctctctctctctctctctctctctctttcat----acacacacacacacacacacacac 116
Query: 244 acacacacacacacacacacctgaatatattca 276
|||||||||||||||||||||||||||||||||
Sbjct: 115 acacacacacacacacacacctgaatatattca 83
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 161
Number of extensions: 48
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space: 179024
Effective search space used: 179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no341_f08.g1 MSMg01no341_f08.g1 CHROMAT_FILE:
MSMg01no341_f08.g1 PHD_FILE: MSMg01no341_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:33 2005
(442 letters)
>mm_chr2_8489362_8490203
Length = 842
Score = 766 bits (396), Expect = 0.0
Identities = 430/442 (97%), Gaps = 2/442 (0%)
Strand = Plus / Plus
Query: 1 tatatatgactggggaacattcctcgaaaaatgaagtcaagagtttactaagtgtttaag 60
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 203 tatatatgactggggaacattcctcaaaaaatgaagtcaagagtttactaagtgtttaaa 262
Query: 61 agaagttatagctcttacctacaactcagatttggttcccagcacctacatggcaattgt 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 263 agaagttatagctcttacctacaactcagatttggttcccagcacctatatggcaattgt 322
Query: 121 ccttaattccagttctgtgatatctgatgttttcttcttggtccatgggaactaagcctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 323 ccttaattccagttctgtgatatctgatgttttcttcttggtccatgggaactaaacctt 382
Query: 181 tgtatggcattcatacgtgcaagtgcataaaataaaagtaaccagaattttttttttcaa 240
||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 383 tgtatggaattcattcgtgcaagtgcataaaataaaagtaaccagaatttttttt--caa 440
Query: 241 aaaaatgtggaggtctatctaggaaaacctaatgtgtgtttgtatagtcaacacatacaa 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaaatgtggaggcctatctaggaaaacctaatgtgtgtttgtatagtcaacacatacaa 500
Query: 301 ctgtgcccacactaatatgaactgcctgcagttatgcatgtacaccacacatattcacat 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 ctgtgcccacactaatatgaactgcctgcagttatgcatgcacaccacacatattcacat 560
Query: 361 attaaaatagaaatatgtaaatgaaaggaagaaataaaatacacctatcaattaagcaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attaaaatagaaatatgtaaatgaaaggaagaaataaaatacacctatcaattaagcaac 620
Query: 421 aattactttgtacactggcatt 442
|||| |||||||||||| ||||
Sbjct: 621 aattgctttgtacactgacatt 642
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space: 360689
Effective search space used: 360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
