BAC Information

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BAC

Clone NameMSMg01-341H04
Chromosome2 (Build37)
Map Location 55,142,016 - 55,142,432
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041792, LOC100042878, Galnt13
Downstream geneLOC666936, Kcnj3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341H04.T7 (MSMg01no341_h04.b1)MSMg01-341H04.TJ (MSMg01no341_h04.g1)
ACCAG455242AG455243
length748763
length of high quality
(start - end)
420 (44 - 463)419 (74 - 492)
definitionCHROMAT_FILE: MSMg01no341_h04.b1 PHD_FILE: MSMg01no341_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:42 2005CHROMAT_FILE: MSMg01no341_h04.g1 PHD_FILE: MSMg01no341_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGTTTCCTTCCATCTACACCACCTTGCTGAATACGGAGGACACAGGG
TTCTAATGTGCTACTGATGATACAATTCAGAGGTCGATGAGCTATATTAA
AGAAAAATAAAAGAAATTAGGACAGCTATTTTTGAAATTAAGGATTTTCA
TTTTACTGGTCAAAAATAGGGCAATGATTGAGCTGTTTAATTGAAAGGAT
AAAATCAAGGGCAGAATTTCTTTTAATCTTATTTTTTCTCTTTTCTGTTT
CCTTTGTTTTGCACTGCCATATTCATCACACAAGGTAATCTTTCCAGGAT
GTCTGTTTTCACAGATGGGCTATGTATTAGTTTAGAGTCCTTTCTGGCAC
ATTCTAGGCCCTATATCTGGTTATTACTAATATTTGTTCTGTTTCAAACA
TTTATTTTATGTGTGGTTGTGCTATGCTCCTACCTTGACTCGCTGTCTAT
CTAACAAACTAGTATCTAACGCCCACCTCCATTGTCCCCCATGATTGCTG
TTCCCGACTTCTACGGCATCCCCTCATTAATCGCGTCAGTCCCATACTGG
TCCCATTCCTCCCCGTTTACCCCCTCTCTCTTCTTTTTTGTTTGCCCCTT
TAGTTCTTTTTTGTTAACTACCTCCCCCTCTACTTTTTTTTCCCTTTATT
TTTCCCCTTATTTTTTCTTTTCGCCCTATTTATCTCACTTCTTTATCT
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTATACAGGATGCCAAGATTCCAGGA
GACTAAGTTTCCGTGAACTTTTCACCTCAGGACAGTGCCCAGGTTTTCAG
AGCCTGTCGCGCTTGTCACTACTGGAGTGGATGCGGCACTCCTACAGGAT
CACCTTTCTCCTCAGCTTCCCTAGTTCAACAACAGGGGTCAGCTGCTTCT
CTATATTGGCTGGGTGCAACAGTGGGAACTTATAGAGCCCACCTCCAGCA
GGAAGACAAGACACCAAGTGAGGGATGGGGTTCCCATCCCACAGTCATAT
CTCTGACCCATAATTGTTCCAGTCTGAAAGAATTACAGGGATAGAAATGG
AGAGGAGCCTGAGAAAAAGAAGGTCCAGCAACAGGCCCAAATTGGGATCC
AGCTCAAGGGGAGGCCCCAAGGTCTGCCCCAATTACTGAGGCTATGGAGC
GCTTCACAAAAGGGGTCTATCATGACTGTTTTCTTAAAGACCCATCTAGT
ATTTTGAAAGATACTTCCTACCTATTTGTAAATATAGAGTATTTTATTAA
GTTGTACCCCTCTTTTTTCAGGCCCCTGGCTTTTCTTGTTTTCTATATCC
TCTATTTTTTTTGTTCTTACCGCCTTTCCCTCCTTTATCATTATTTTGCG
TACCGCTTCTTTTTCTCTCCTTTTTCTCCCCTTCCCTCCCCTCCTTCCCC
TTTCTTCTATTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_h04.b1 MSMg01no341_h04.b1 CHROMAT_FILE:
MSMg01no341_h04.b1 PHD_FILE: MSMg01no341_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:42 2005
         (420 letters)



>mm_chr2_55141812_55142632
          Length = 821

 Score =  768 bits (397), Expect = 0.0
 Identities = 412/417 (98%), Gaps = 1/417 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtttccttccatctacaccaccttgctgaatacggaggacacagggttctaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtttccttccatctacaccaccttgctgaatacggaggacacagggttctaat 264

                                                                       
Query: 65  gtgctactgatgatacaa-ttcagaggtcgatgagctatattaaagaaaaataaaagaaa 123
           |||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 265 gtgctactgatggtacaaattcagaggtcgatgagctatattaaagagaaataaaagaaa 324

                                                                       
Query: 124 ttaggacagctatttttgaaattaaggattttcattttactggtcaaaaatagggcaatg 183
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 325 ttaggacagctatttttgaaattaaggattttcattttactggtcaaaaatagggcaacg 384

                                                                       
Query: 184 attgagctgtttaattgaaaggataaaatcaagggcagaatttcttttaatcttattttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 attgagctgtttaattgaaaggataaaatcaagggcagaatttcttttaatcttattttt 444

                                                                       
Query: 244 tctcttttctgtttcctttgttttgcactgccatattcatcacacaaggtaatctttcca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctcttttctgtttcctttgttttgcactgccatattcatcacacaaggtaatctttcca 504

                                                                       
Query: 304 ggatgtctgttttcacagatgggctatgtattagtttagagtcctttctggcacattcta 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggatgtctgttttcacagatgggctatgtattagtttagagtcctttctggcacattcta 564

                                                                    
Query: 364 ggccctatatctggttattactaatatttgttctgtttcaaacatttattttatgtg 420
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 565 ggccctatatctggttattactaatatttgttctgtttcaaatatttattttatgtg 621


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 821
Length adjustment: 9
Effective length of query: 411
Effective length of database: 812
Effective search space:   333732
Effective search space used:   333732
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)