BAC Information

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BAC

Clone NameMSMg01-341M21
Chromosome2 (Build37)
Map Location 156,245,860 - 156,440,645
singlet/doubletdoublet
Overlap geneEpb4.1l1, 0610011L14Rik
Upstream geneNcoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941
Downstream geneDlgap4, Myl9, LOC433546, Tgif2, LOC100043677, 1110008F13Rik, Sla2, LOC100043880, Ndrg3, LOC668943, Dsn1, 9830001H06Rik, Gm1332, Samhd1, Rbl1, LOC100043882, 4922505G16Rik, Rpn2, Ghrh, LOC100043678, Manbal, Src, Blcap, Nnat
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341M21.T7 (MSMg01no341_m21.b1)MSMg01-341M21.TJ (MSMg01no341_m21.g1)
ACCAG455510AG455511
length770827
length of high quality
(start - end)		487 (33 - 519)251 (71 - 321)
definitionCHROMAT_FILE: MSMg01no341_m21.b1 PHD_FILE: MSMg01no341_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:09 2005CHROMAT_FILE: MSMg01no341_m21.g1 PHD_FILE: MSMg01no341_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(156,245,860 - 156,246,338)(156,440,401 - 156,440,645)
sequence
GCGGCCGCTATACGACTCCTATAGTTACAGGATCCGCGGAATTCCTGGCC
TTCTGAGGTCTAGCCCTTGCTCTGGGAACCTAAGCTCAGTTTCTTCAGCT
AACCCCATAGACGCCCTACCTTCTATGGATACTATTCTAGGTTCACTGTT
TTCGTTACTTTGTCCTTTTGCTATGCTTAGCTTTACGTGTGTGTTCAAAG
CAGTACCTTCCGGCAGGAGCCTGTAAGGTCCAGGGCGGATATAATCATAA
TTCAGAGAAACGCTTGACTTTGGGCATGCTTGGGCCTGTGGGTCCCCAGG
GTCTTGGGACCAGGGGCTCGGCCCTTGATTCCAAAGAGTGCCAAAGGACT
GCCACCTGAGACTGGTTGGAAAGAGCTGCGAAGCCCTCCACAGCTCCGCA
GCTTAGGCCGCCCGAACAATAGGAGGGAGGCTCAAGGGTAGTGGGCGTCG
GCCAGGTCCCTGCTGGAGGGAGAGGAGGCCAGTGGTGCTGCTGGTCCCCC
AGGTTAGCCCAGGCTACCGGNCTGAACGCCAAGCTCTCGGTCAAATGCGA
GGTGAAACAGAATTGGGTGCCGGTGGGGACTCTCTATTAGGGGGAGTTAG
GCCGAGCCCCCCGGGCTGGTACCTGAAAGGAAAGAAGTTCCTTGTAAAAA
CCCCTCTTATTGGTTCCCTGTCTTAACCCCCACCCTACATTCTTCTTGTT
TTTTGTGGGTTTCGCCCCCTTGTATGCACCTTTCTCCTTTTCCTCTTTAA
ACCATTCCTTTTCACCCCCT

CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCACAGACTCCTCCAACAGGCATTCTGACAT
GGTCCTGTCTGGTGAAGCCACAGAGGCAGAGGGACTGGACCCTCCCCCAC
CGCACAGGAGGTGCCAAGAGTAGAGGCGGGGCAGTCCCGCCTCCTTAGGG
CTGGGGACTGCAGCCCCCTCCCCCTCTGCATTTTCTACTTCCAAGCAGGT
GGAGGTGCTGGGACATTCCCTCCCCCCCCCCCCCCATCAGCACAGTCCTC
CAAGCGTAAGGTTCCCCATCCTTTGGGTATCTCCGCCTCAATTGGCCTTC
ACCCACCCACCTACCCACCACCCTTTCCCCATTTCATTTTCCCCCACATC
ATCATCAGTCGGTGATTGCCCTTTCTGTAATTCAGGTTGTCTATAAAACC
GCGCCAAATTATATGTTTGCTGGCTTGTTCGGTTTTTTCTCCCTTCGCTC
TGTCTTTCCTTTCGTGGCCTCCGTCTCTCTCTTCTTTTTTCCTTCGCTCC
TTTTCCTTTCCCATTTTGATCCGCCCCCCTTTTTCCTTTCCCTGTTCTTG
TTCCTTCTCCTTTTCCCCCCCTCTTTTCTCCTTTTCTTCTTTTTTCCCCT
CTCTCCCTTCCGCTTCCTTTCCTCTCCTTTTTCTTTTTCTTTTTCCTCTT
TTTTCCTTCATTTTTCCCTTTTTTCTTTTTTTTTTTCTCCCCTCTTTCCC
CCCCCTTTTTTTCTCGTTTTTTTTTTTTCCCTTTCCCTTCGCTTTCGCTC
TCTTACTCTTCTACTTCGTTTTATTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_m21.b1 MSMg01no341_m21.b1 CHROMAT_FILE:
MSMg01no341_m21.b1 PHD_FILE: MSMg01no341_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:09 2005
         (487 letters)



>mm_chr2_156245652_156246538
          Length = 887

 Score =  849 bits (439), Expect = 0.0
 Identities = 469/479 (97%)
 Strand = Plus / Plus

                                                                       
Query: 9   attcctggccttctgaggtctagcccttgctctgggaacctaagctcagtttcttcagct 68
           ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 209 attcctggccttctgaggtctggcccttgctctgggaacccaagctcagtttcttcagct 268

                                                                       
Query: 69  aaccccatagacgccctaccttctatggatactattctaggttcactgttttcgttactt 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aaccccatagacgccctaccttctatggatactattctaggttcactgttttcgttactt 328

                                                                       
Query: 129 tgtccttttgctatgcttagctttacgtgtgtgttcaaagcagtaccttccggcaggagc 188
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tgtccttttcctatgcttagctttacgtgtgtgttcaaagcagtaccttccggcaggagc 388

                                                                       
Query: 189 ctgtaaggtccagggcggatataatcataattcagagaaacgcttgactttgggcatgct 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ctgtaaggtccagggcggatataatcataattcagagaaacgcttgactttgggcatgct 448

                                                                       
Query: 249 tgggcctgtgggtccccagggtcttgggaccaggggctcggcccttgattccaaagagtg 308
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 449 tgggcctgtgggtccccagggtcttgggaccaggggctcggcccttgcttccaaagagtg 508

                                                                       
Query: 309 ccaaaggactgccacctgagactggttggaaagagctgcgaagccctccacagctccgca 368
           ||||||||||||||||| ||||||||||||||||||||||  | ||||||||||||||||
Sbjct: 509 ccaaaggactgccacctcagactggttggaaagagctgcgtggtcctccacagctccgca 568

                                                                       
Query: 369 gcttaggccgcccgaacaataggagggaggctcaagggtagtgggcgtcggccaggtccc 428
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 569 gcttaggccgcccgaacaataggagggaggctgaagggtagtgggcgtcggccaggtccc 628

                                                                      
Query: 429 tgctggagggagaggaggccagtggtgctgctggtcccccaggttagcccaggctaccg 487
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tgctggagggagtggaggccagtggtgctgctggtcccccaggttagcccaggctaccg 687


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space:   418329
Effective search space used:   418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no341_m21.g1 MSMg01no341_m21.g1 CHROMAT_FILE:
MSMg01no341_m21.g1 PHD_FILE: MSMg01no341_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:09 2005
         (251 letters)



>mm_chr2_156440201_156440845
          Length = 645

 Score =  443 bits (229), Expect = e-129
 Identities = 243/251 (96%), Gaps = 6/251 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacagactcctccaacaggcattctgacatggtcctgtctggtgaagccacagaggcaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cacagactcctccaacaggcattctgacatggtcctgtctggtgaagccacagaggcaga 386

                                                                       
Query: 61  gggactggaccctcccccaccgcacaggaggtgccaagagtagaggcggggcagtcccgc 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 385 gggaccggaccctcccccaccgcacaggaggtgccaagagtagaggcggggcagtccagc 326

                                                                       
Query: 121 ctccttagggctggggactgcagccccctccccctctgcattttctacttccaagcaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctccttagggctggggactgcagccccctccccctctgcattttctacttccaagcaggt 266

                                                                       
Query: 181 ggaggtgctgggacattccctccccccccccccccatcagcacagtcctccaagcgtaag 240
           ||||||||||||||||||||      ||||||||||||||||||||||||||||||||||
Sbjct: 265 ggaggtgctgggacattccc------cccccccccatcagcacagtcctccaagcgtaag 212

                      
Query: 241 gttccccatcc 251
           |||||||||||
Sbjct: 211 gttccccatcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 645
Length adjustment: 9
Effective length of query: 242
Effective length of database: 636
Effective search space:   153912
Effective search space used:   153912
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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