BAC Information

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BAC

Clone NameMSMg01-341O01
Chromosome2 (Build37)
Map Location 163,055,014 - 163,055,342
singlet/doubletsinglet
Overlap geneLOC269389
Upstream genePtprt, LOC100043895, LOC100043896, LOC100043696, LOC497655, LOC668947, Sfrs6, L3mbtl, LOC241765, Sgk2, Ift52, Mybl2, 2410116G06Rik
Downstream geneJph2, 3230401D17Rik, LOC100043708, Gdap1l1, D930001I22Rik, LOC100043899, Hnf4a, 5830472M02Rik, Serinc3, Pkig, Ada, Wisp2, Kcnk15, Rims4, Ywhab, LOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341O01.T7 (MSMg01no341_o01.b1)MSMg01-341O01.TJ (MSMg01no341_o01.g1)
ACCAG455565AG455566
length731772
length of high quality
(start - end)
458 (40 - 497)329 (76 - 404)
definitionCHROMAT_FILE: MSMg01no341_o01.b1 PHD_FILE: MSMg01no341_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:14 2005CHROMAT_FILE: MSMg01no341_o01.g1 PHD_FILE: MSMg01no341_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAGTTGGCGGCGCTATACGACTCACTATAGTTCCAGGATCCGCGGAATTC
TACATCTTGATCCCAAGGCAACCAGGAAGAGACTACTTCTTCCCTGCACT
GGGCGGGACTTAAGCATAGAACCTCAAAGCCCACCTCCCCAGTGACTCAC
TTCCTCCAACAAAGCCATACTTACTCCAACAAGGCCACACCTCCTAATAA
TGTCACTTCTCATGGGTCACATATATTCAAGCCACCACGGCACTTTAGTT
ATTCTTTTCCTTTATTTGAGACAGGGACTTATGTTGCTTAGGCTGGTCTT
GAACTCCTGGACTTAATTAATCCCACACCAGCTTCCTTCTAGCTGGTAGT
ATAGGCCTGTATGATACCTATTTATGTCTTTAGAAAAACAGCTATGGGAT
AAAGCAGATGTAAAAGTTTAAGATGGGCCAGGCAGTGGTGGCACATGTCT
TTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGG
CCAGCCTGGTCTATAGAGTAAGTTCCAGGACAGCCAGGGCTACACAGAGA
AACCCTATCTTTGAAACCAAAAAAAAAAAAAGTTTAAGATGGGCTATAGA
GCAATGGCCTATATGCTCCCTAATGCTATAACCCATTAATAACGCCCATG
TCGTGGCGACCCCCCAATCCAAAATTGGGTTCAATGACCACTTCTAACTG
TATTCTTGCTCCCGGTACGTATCCACCTGCN
ATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTTTTAGCTAGTCAAACTGGACTT
TTAGGAGGAAGTTGCAGGAAGATAGACATTGGTAGGAGGGGAGGGAGGCA
GCCAAGCCTGTACTGGCTTAGGACATCCATGCTGCCCAGTGGCCAGTCCA
ACCATCTTCACGGGGGAGTGCACAGGTGTCACCTTGGTCAGCGAGGGGAC
ATCACTGTGGGCAGAGCAGGCAGGGGAAGGGAGCAGAGGCCAGAGGGATG
ATAGGGCAAAGCCTTCCCACAGATGGCACTGCGATTACCCTCCCCAGAAA
GGAAGCCGGCACTCTTTCCCCGTGCTTATCTGATGCTGTGGCTGGAGAGA
CAGGCCAGGGCAGGCCTGAGGGTTGCTTCGCTAGCACATCATCCTCCCGG
CAGTTGACATCTGCTTGCCCTGCGGCTCTTTCTGTGCCTTCCCTACTATA
CGTCTGTTTTGGAGGCCCCTATCTTTGCTTTTGTTTAGCCACCTACGGCC
GCCTGTTTTATTCCATGTCCCTTTCCCCCCCTCGTCCCCCCATCGCTTTT
TCCCCTCCCCCCTTCCCATCGATCCCCCCGTTTCCTGTGCCCTACCCCTT
TTTCCCTCGTCATTCCCGTTTCCTCCCTTTATACGCCCTCACTTCGCCGC
CCTATTGGCCCCCTCTTCCTTTTCCCTGTACTATCCGCGTTCCCCCTATC
GCAGGTACACTGTATTGGCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_o01.g1 MSMg01no341_o01.g1 CHROMAT_FILE:
MSMg01no341_o01.g1 PHD_FILE: MSMg01no341_o01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:14 2005
         (329 letters)



>mm_chr2_163054814_163055542
          Length = 729

 Score =  590 bits (305), Expect = e-173
 Identities = 323/329 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttttagctagtcaaactggacttttaggaggaagttgcaggaagatagacattggtag 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 529 tcttttagctagtcaaactggacttttaggaggaaattgcaggaagatagacattggtag 470

                                                                       
Query: 61  gaggggagggaggcagccaagcctgtactggcttaggacatccatgctgcccagtggcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gaggggagggaggcagccaagcctgtactggcttaggacatccatgctgcccagtggcca 410

                                                                       
Query: 121 gtccaaccatcttcacgggggagtgcacaggtgtcaccttggtcagcgaggggacatcac 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gtccgaccatcttcacgggggagtgcacaggtgtcaccttggtcagcgaggggacatcac 350

                                                                       
Query: 181 tgtgggcagagcaggcaggggaagggagcagaggccagagggatgatagggcaaagcctt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 349 tgtgggcagagcaggcaggggaagggagcagaggccagagggatgatagggcaaagccct 290

                                                                       
Query: 241 cccacagatggcactgcgattaccctccccagaaaggaagccggcactctttccccgtgc 300
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 289 cccacagatggcactgcgattaccctccccagaaaggaagccagcactctttccccatgc 230

                                        
Query: 301 ttatctgatgctgtggctggagagacagg 329
           |||||||||||||||| ||||||||||||
Sbjct: 229 ttatctgatgctgtggttggagagacagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)