BAC Information

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BAC

Clone NameMSMg01-342H02
Chromosome2 (Build37)
Map Location 165,007,236 - 165,007,583
singlet/doubletsinglet
Overlap geneCdh22
Upstream geneWfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a, Svs6, Svs5, Slpi, Matn4, Rbpjl, Sdc4, 2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt, LOC670507, Wfdc2, OTTMUSG00000016288, Wfdc6a, Spinlw1, Wfdc8, Wfdc6b, Wfdc16, OTTMUSG00000001088, Wfdc10, LOC629761, Wfdc13, Spint4, OTTMUSG00000016293, Wfdc3, Dnttip1, Ube2c, Tnnc2, Snx21, Acot8, Zswim3, Zswim1, 1700020C07Rik, Neurl2, Ctsa, Pltp, F730014I05Rik, Zfp335, LOC629777, Mmp9, Slc12a5, Ncoa5, Cd40
Downstream geneSlc35c2, Elmo2, Gm1008, Zfp334, 4833422F24Rik, Slc13a3, 2810408M09Rik, Slc2a10, Eya2, Prkcbp1, LOC546780, Ncoa3, Sulf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342H02.T7 (MSMg01no342_h02.b1)MSMg01-342H02.TJ (MSMg01no342_h02.g1)
ACCAG455995AG455996
length797741
length of high quality
(start - end)
219 (63 - 281)349 (67 - 415)
definitionCHROMAT_FILE: MSMg01no342_h02.b1 PHD_FILE: MSMg01no342_h02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:58 2005CHROMAT_FILE: MSMg01no342_h02.g1 PHD_FILE: MSMg01no342_h02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGTTXXXXXXXXXXXXXXXXXXXTCCACAGAGGATCCGCGGAATTCAAT
AGTCTCGTTTAGAGTGACGCCCTCCACAGAGAACAGCAAACCCAGCTACT
GAGTATGGCCCACCCTGCCTGGGTCCTCCAGGTGCGCTAGAGAATGGAGG
GCAGGAAATTTTATATACTTTTATAAATAAAAACCTGTTCAGAGATTTTT
GTACTGTTATGGATGAGATTTAAATCTTTTTTTGTTTGATTTTTGTACCC
GTATTTGGTATTTAACACTTACTTTCAACCTCTAGGAAGGGTAGATAATA
AAAAAAATATTTCTGTGGCTTATCTTCTTCCTTCCTTCCTTCCTTCCTTT
CTCTCTCTCTCTCTCTCTCTCTCTTTCTCTTTCTCTCACTCTTTTCTTTT
TTTCTGTCTCCCCCCTTCAATCGTCTTTCCATCCCTTATTTTTTTTTTTT
TTTACCTTCGCTCCCTCTTCATTCTCCTTATTATATATTTCGTCTCTTTT
TCCATACTTCTCCTTTTTCTTTTATTTTTCCCCCCTTCCCTCTTCCCTTC
TTTATCATTTCCCCCCCTCTTTTCTCATCCGTCTTCCCTCTTTTTTCTTT
TTACCCCCATATCTCTCCCCCTTTTTTTTTACCTCATCTCCTCCCGCCCA
CCCTTTTCCTAAACCAATTTTTCTTTGTTTTCCTATCTTATCTTTTGCTC
CCTCCCCGCTATTTTATTTTTATTCCCCATTCATATATTTTACATTCTTT
GTCTCTTTTCCTCGCCTTTTACTCACCCTTATTTCTTTTATTATTCC
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCTGGCACAGTGGGGTCCTCTGGAGTCCCCATAG
AGGCAGCTTCTAGAAGGGCTCCTGAAGGCAGAAGTCCCAGGCCTCCTGTG
TGTAGCTTGGGAGTGTTCCTCAGCTCTGCCTAGCAGCAGGAGACCCAGGG
GAAGCCTGCTGGTAGCTGCCACCTTCATAAGCTGTGTTGGGAGAGATCCC
TGAAGCCCCAGAGGGCCTTGCTTGGAGTACCCAAGTGACTCTGGATAGAG
TTACATCTGAGCTTGGTGTCTCTACTCCCCACAGTCAACCTTCCATCCCC
TCTCCCCACCCAACACAGGCTGGCCATAGATCCATCCATCTCCCTTCCCT
CAGAGTCTGCTCTCTGCAAGGAAGGTTCTGAGGTTCTCACGCCTACTGGA
TCCATAATGAGAAATAATGGCTTGATGTGTGTGCCTGTGGCAGATCCTTG
CTTCCACCAGTAATCTCAGGTACTGAGAGAATAACTGTATTTAGTGTTCT
TTTACCCCCTGCCTATGTCTAGGCTTTCTTTCAAGAACTTTCTGTCCCAT
TGTCCCTTGTTTTTGAACCTCCGCTTCTCTCTTGTCTTGTTGACCAACCA
ATCATTGTACCTTGTTCTCTCGTTTTTAACTCCCCCCTACGTATTTTTTA
ATCTCTTCTTTTCATTTGTTTTCCTTTCTTCTTTCTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_h02.g1 MSMg01no342_h02.g1 CHROMAT_FILE:
MSMg01no342_h02.g1 PHD_FILE: MSMg01no342_h02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:58 2005
         (349 letters)



>mm_chr2_165007036_165007784
          Length = 749

 Score =  650 bits (336), Expect = 0.0
 Identities = 345/348 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctggcacagtggggtcctctggagtccccatagaggcagcttctagaagggctcctgaa 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 tctggcacagtgggatcctctggagtccccatagaggcagcttctagaagggctcctaaa 260

                                                                       
Query: 61  ggcagaagtcccaggcctcctgtgtgtagcttgggagtgttcctcagctctgcctagcag 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 ggcagaagtcccaggcctcctgtgtgcagcttgggagtgttcctcagctctgcctagcag 320

                                                                       
Query: 121 caggagacccaggggaagcctgctggtagctgccaccttcataagctgtgttgggagaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggagacccaggggaagcctgctggtagctgccaccttcataagctgtgttgggagaga 380

                                                                       
Query: 181 tccctgaagccccagagggccttgcttggagtacccaagtgactctggatagagttacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccctgaagccccagagggccttgcttggagtacccaagtgactctggatagagttacat 440

                                                                       
Query: 241 ctgagcttggtgtctctactccccacagtcaaccttccatcccctctccccacccaacac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgagcttggtgtctctactccccacagtcaaccttccatcccctctccccacccaacac 500

                                                           
Query: 301 aggctggccatagatccatccatctcccttccctcagagtctgctctc 348
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggctggccatagatccatccatctcccttccctcagagtctgctctc 548


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space:   251600
Effective search space used:   251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)