BAC Information

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BAC

Clone NameMSMg01-342L22
Chromosome2 (Build37)
Map Location 42,113,536 - 42,113,945
singlet/doubletsinglet
Overlap geneLrp1b
Upstream geneLOC625094
Downstream geneLOC100041228
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342L22.T7 (MSMg01no342_l22.b1)MSMg01-342L22.TJ (MSMg01no342_l22.g1)
ACCAG456222AG456223
length1,416740
length of high quality
(start - end)		---418 (65 - 482)
definitionCHROMAT_FILE: MSMg01no342_l22.b1 PHD_FILE: MSMg01no342_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:21 2005CHROMAT_FILE: MSMg01no342_l22.g1 PHD_FILE: MSMg01no342_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAGTAAAAGAGATNTTTGGCAGGCTAATTCTTTGGTGGAGAGAGAAGGAG
GAGAGAGAAGGGAAGTAGATCTCCGTAGTGTGCGTGACTTCACCACAACA
CCAACCACGGAACTTAACATGTCTGGATGAAAGTTTTTTTTATTTTATTT
CTCCCCCCGCTTTATATAATTAGATTTCCTTTTGCCCGATTTTTTTAGCC
CGCCGGGCGCGCCCTGTGCCTTATATCCTCGTCTTTTTTACCGCGTCGGT
GCCAGTCCGTAAACTATAAATAATCTCCACCGGCCGTTCCTGTGTTTCTA
GCGCCCAGTAGTTAGACGCAGGGAGCGTCGGTTACCGTTTTACGAACGCG
TCGCGGGGTAAGCAATTATGCTGATAATATTGGCGCCATTATGGGCAGCC
ACAGACGCTGTAGGTGCGAAGTAGTTTGGTAGTGCGGTGTGCTCTGTGTT
CCGCCGCCGCCCGGTAGAGTATATAATGATTGCGCACGGAGAGAGTAGTT
TGTAATGAAAGCGAATATTCCTCCGGCCCGTATGCACGCGCGTCGTCCTT
GCGCAAATAAAGCAGATTTCTGCAACATATCAGTCGCTCCACATCATTGT
GCTTTGTGTATTACGCGCGCTNACCAACACGACAAGAGTCAGTATACAAC
ATGTTCGGCTCTGTGTTTGCCGCCCTCGCCACACCAACATATATATGTTG
ATTGTTATATTACGGACATATAAGCGGTATATGACGTAGAGAATTAGGGC
GCGTTGTGGCTATGCGCATCGCACGCGCGGCGGTTATTTGTTGTGTATTA
TTGCTGATATATTGCACGATATACGACCGTGAGCACGAGTGATAGAACGA
TGAGGGTAACTATATATTATAACAGAATGTGTAACAATACGGTATCGGTG
TCAACATATTCATCGCAACACATATACGACGCGCGTGAACAACATATGTA
TGCACGTGTTAGCACCAGCGACCTCTTGAATCCGCTATACACTGCTATAA
TATATTAATTAAGCGTGGAGTAATCACCACGAGATGATAGGGCGACGATA
CCATAACGGAGGAAGCGTAAATTATATATGATTACATATATTATCACTGA
CTCGCTATCTTACGTATCACGCAACGGCATTTGCTCTATTGTCGCGTCGC
CTCGTTCATCACACTAGAGAGTCGCAGCAAGCCGTATAGCACGTTATTAC
CTCTATTAATTTATCATATCTATATCGACCGCATACGCACATGATTATTG
TATAACTACAGTATGCACAGCGAACTATGTATATTTGACATGTGTGACGC
ACTGCTGACAATCGCGTAATATGTGTATCGATGATTTGAATAGAGACAAT
AGCAGTGTCTCTATATGATAGGTAAGAAAACACTCGGTTATAAGAGAAAT
ATAATATTATTACGGN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAGTGTTGCGTTTGAGCACTTATAAAAAGTTTTTCAA
CAAAAACAAGCACCTATTATTAGCAAAATGTTATGGTAGTTACTCCTTTA
ATATGATGAGTATTGCATTGGTATTAAAGTCCTTGAGACTATGGTAAAAT
GAAACCAAGTACATAAATTAATAGCTAGCAAAATATGATCATTCCTAAAA
CATAGGTGTTTTTATCACAGATATGAAGAACTTCTGTTGAGTTATTTTTT
TTTTTAAAAAAAGGTGGTTTTGACTATTGTAGGACTAGAGAGCCAACTGC
ATTGCAAAAGAACAATGTATGCTTGCCTGATCTACATTCAGGCAAAAGAG
GAAAAAAAAAATGCCAGTTCTATTAATATGAACGTCATACTCAGAAGCCA
GAGTTGTGTGATGTATAACCTATGTAATGTAATGTATTAGGACCCACAAG
GAATATGTGTGGATTATGTGGGAGCATTAAAGTTGGGCTTAAAGTGTAAC
TTTATAAAGTAGGCATAGATGTATTATATGAACCTTGTAGCCCAGCAAGG
AATTTAAATTTTTTTCTGTGGGCGGAAGGAGGGCTTTTAGAAAGCTTAAC
AGGGGGAAAAAAGGAAATATTTGGCTTTGAATAAAGCCCCTGACACCCTT
AAGATTATGAATTTGTTTTTGCCCCCTTCTTTTTTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_l22.g1 MSMg01no342_l22.g1 CHROMAT_FILE:
MSMg01no342_l22.g1 PHD_FILE: MSMg01no342_l22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:21 2005
         (418 letters)



>mm_chr2_42113519_42114336
          Length = 818

 Score =  735 bits (380), Expect = 0.0
 Identities = 405/416 (97%), Gaps = 6/416 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgttgcgtttgagcacttataaaaagtttttcaacaaaaacaagcacctattattagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 agtgttgcgtttgagcacttataaaaagtttttcaacaaaaacaagcacctattattagc 368

                                                                       
Query: 61  aaaatgttatggtagttactcctttaatatgatgagtattgcattggtattaaagtcctt 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 367 aaaatgttatggtagttactccttcaatatgatgagtattgcattggtattaaagtcctt 308

                                                                       
Query: 121 gagactatggtaaaatgaaaccaagtacataaattaatagctagcaaaatatgatcattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gagactatggtaaaatgaaaccaagtacataaattaatagctagcaaaatatgatcattc 248

                                                                       
Query: 181 ctaaaacataggtgtttttatcacagatatgaagaacttctgttgagttatttttttttt 240
           ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||   
Sbjct: 247 ctaaaacataggtgtttatatcacagatatgaagaacttctgttgagtaattttttt--- 191

                                                                       
Query: 241 taaaaaaaggtggttttgactattgtaggactagagagccaactgcattgcaaaagaaca 300
             ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 190 --aaaaaaggtggttttgactgttgtaggactagagagccaactgcactgcaaaagaaca 133

                                                                       
Query: 301 atgtatgcttgcctgatctacattcaggcaaaagaggaaaaaaaaaatgccagttctatt 360
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 132 atgtatgcttgcctgatctacattcaggcaaaagaggaaaaaaaaa-tgccagttctatt 74

                                                                   
Query: 361 aatatgaacgtcatactcagaagccagagttgtgtgatgtataacctatgtaatgt 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73  aatatgaacgtcatactcagaagccagagttgtgtgatgtataacctatgtaatgt 18


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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