Query= MSMg01no342_m14.b1 MSMg01no342_m14.b1 CHROMAT_FILE:
MSMg01no342_m14.b1 PHD_FILE: MSMg01no342_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:24 2005
(525 letters)
>mm_chr2_131309528_131310452
Length = 925
Score = 994 bits (514), Expect = 0.0
Identities = 520/522 (99%)
Strand = Plus / Plus
Query: 4 ggaattctcaaattgctgccaggccagaacatattcctatagctctttttctttttatga 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcaaattgttgccaggccagaacatattcctatagctctttttctttttatga 263
Query: 64 tcacaacataaatctttcacacacacactgcaaggcaagtaacatttttcaaatgcatcc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcacaacataaatctttcacacacacactgcaaggcaagtaacatttttcaaatgcatcc 323
Query: 124 ttctatacatctcttgaatctgaatttgaatattgagcgttatgtattgctctttgccct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttctatacatctcttgaatctgaatttgaatattgagcgttatgtattgctctttgccct 383
Query: 184 gacccactttgaaagacttccggactgtccttccttcccaggtttctccattcaggatag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gacccactttgaaagacttccggactgtccttccttcccaggtttctccattcaggatag 443
Query: 244 ccacaaggaccttcttggggcctgatccaccttcctacgtggctcaattccagctttcag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ccacaaggaccttcttggggcctgatccaccttcctacgtggctcaattccagctttcag 503
Query: 304 tgctgttggggaaagagcaatgaacaggctgttatcctccaggagtactctccttctcag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgctgttggggaaagagcaatgaacaggctgttatcctccaggagtactctccttctcag 563
Query: 364 ctgaaatagattcaaggatgattcagagcctcccggtcctgctagtgactcacaagatgc 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 564 ctgaaatagattcaaggatgattcagagcctcccggtcctgctagtgactcacatgatgc 623
Query: 424 tctgtttatgggtaagtgcttctcccaggaagttgacagccctatcctcctacctgagtc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tctgtttatgggtaagtgcttctcccaggaagttgacagccctatcctcctacctgagtc 683
Query: 484 acgagccctctggtgctcccatcaaagcacagttatcaccaa 525
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 acgagccctctggtgctcccatcaaagcacagttatcaccaa 725
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space: 471225
Effective search space used: 471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no342_m14.g1 MSMg01no342_m14.g1 CHROMAT_FILE:
MSMg01no342_m14.g1 PHD_FILE: MSMg01no342_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:24 2005
(474 letters)
>mm_chr2_131434775_131435648
Length = 874
Score = 849 bits (439), Expect = 0.0
Identities = 470/491 (95%), Gaps = 17/491 (3%)
Strand = Plus / Minus
Query: 1 cctggaactggagttgcaggtggtgtgacttaagtcctctgaaggagaaagcagtgttct 60
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 703 cctggaactggagttgcaggttgtgtgacctaagtcctctgaaggagaaagcagtgttct 644
Query: 61 taactgctgagccatctctccagtgctccaacaagtccctggtcttgagagatccttgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 taactgctgagccatctctccagtgctccaacaagtccctggtcttgagagatccttgcc 584
Query: 121 ctctttttcccataggctggtactcaaaagagtgcttcacatacttctggcttagctgct 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 583 ctctttttcccataggctggtactcaaaagcgtgcttcacatacttctggcttagctgct 524
Query: 181 cctccaattccctgtcatattggtttaagatgcaaggtcgtatctaatgactattcagtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 cctccaattccctgtcatattggtttaagatgcaaggtcgtatctaatgactattcagtc 464
Query: 241 acttatcagaaaaagaggcaccagccactggctagaggacaaaagccctctcaagcctct 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 acttagcagaaaaagaggcaccagccactggctagaggacaaaagccctctcaagcctct 404
Query: 301 tcttcatctgtgcctctttaatgagcaatagcacagcttatcctgaaaacaaaccatagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tcttcatctgtgcctctttaatgagcaatagcacagcttatcctgaaaacaaaccatagc 344
Query: 361 aattcatgtcttattaaatctaaagcaataacatacagaaaacttactgaacaccttgt- 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 aattcatgtcttattaaatctaaagcaataacatacagaaaacttactgaacaccttgtg 284
Query: 420 ----------------gtttgttccttcagcaactaaagacacaggggaggcaacactgt 463
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 aacaaagtaacaaatggtttgttccttcagcaactaaagacacaggggaggcaacactgt 224
Query: 464 caccaagccca 474
|||||||||||
Sbjct: 223 caccaagccca 213
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space: 400896
Effective search space used: 400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
