Query= MSMg01no343_a02.b1 MSMg01no343_a02.b1 CHROMAT_FILE:
MSMg01no343_a02.b1 PHD_FILE: MSMg01no343_a02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:41 2005
(554 letters)
>mm_chr2_76918810_76919762
Length = 953
Score = 986 bits (510), Expect = 0.0
Identities = 540/556 (97%), Gaps = 13/556 (2%)
Strand = Plus / Plus
Query: 5 gaattcggatttcggttctataaatgaagaagatgcccagttcagggaggaggtaagtac 64
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcggatttctgttttataaatgaagaagatgcccagttcagggaggaggtaagtac 264
Query: 65 gtatcgaagccatgtagttagtaaatgtgtcctgccaaatccatgcccagcctggctcca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtatcgaagccatgtagttagtaaatgtgtcctgccaaatccatgcccagcctggctcca 324
Query: 125 ggatccaccatgttatcttagcagtcatgctaataaatatttctaaatttttccttaata 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggatccaccatgttatcttagcagtcatgctaataaatatttctaaatttttccttaata 384
Query: 185 ttctatcatttctattttatactccaactatacccttaaaagcttataaaattcatcacc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttctatcatttctattttatactccaactatacccttaaaagcttataaaattcatcacc 444
Query: 245 aactctaaaaaaatatggaatgatattctctatttttta--taga----gattgtttgac 298
|||||||||||| ||| ||||||||||||||| | |||| |||||||||||
Sbjct: 445 aactctaaaaaa-tatagaatgatattctcta------aagtagacagagattgtttgac 497
Query: 299 ttatatttgaagaggagactcaagttcaaaacctaaatcaatatgccatataaccagctg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ttatatttgaagaggagactcaagttcaaaacctaaatcaatatgccatataaccagctg 557
Query: 359 tttattcagtcatacaacttaaaaattttgaacactaggtggcatacaaagatgattaag 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tttattcagtcatacaacttaaaaattttgaacactaggtggcatacaaagatgattaag 617
Query: 419 acaacctctctcctgaacagtgatcagtatgccaggaataataagaaataaagtcaatag 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 acaacctctctcctgaacagtgatcagtatgccaggaataataagaaataaagtcaatag 677
Query: 479 tgcctggagtgtttggaagggtgatgcatgtgataatttctttcatataactcgacttag 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tgcctggagtgtttggaagggtgatgcatgtgataatttctttcatataactcgacttag 737
Query: 539 ccactcaggaatgaca 554
||||||||||||||||
Sbjct: 738 ccactcaggaatgaca 753
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 953
Length adjustment: 10
Effective length of query: 544
Effective length of database: 943
Effective search space: 512992
Effective search space used: 512992
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no343_a02.g1 MSMg01no343_a02.g1 CHROMAT_FILE:
MSMg01no343_a02.g1 PHD_FILE: MSMg01no343_a02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:41 2005
(281 letters)
>mm_chr2_77037122_77037802
Length = 681
Score = 520 bits (269), Expect = e-152
Identities = 278/281 (98%)
Strand = Plus / Minus
Query: 1 aggagttggtgttggtagatgtctacatggtggaaatgctgtgaagagaaagccaagcct 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 481 aggagttggtgttggtagatgtctacatggtggaaatgatgtgaagagaaagccaagcct 422
Query: 61 ttgtggcatccctctgtggataggggacctgagaaggcgacattcaaattctgcagatgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ttgtggcatccctctgtggataggggacctgagaaggcgacattcaaattctgcagatgc 362
Query: 121 gctgaggcagtgctgaggtttggggacaacaacagtctggagggaatgatgaggcatgag 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 actgaggcagtgctgaggtttggggacaacaacagtctggagggaatgatgaggcatgag 302
Query: 181 ctcacccaggtcttgtgggatgttcttgataagaactacagttggtttgggaaaactcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctcacccaggtcttgtgggatgttcttgataagaactacagttggtttgggaaaactcca 242
Query: 241 agggtccctgtattttctgagtgcaaacaggcttcccttag 281
|||||||| ||||||||||||||||||||||||||||||||
Sbjct: 241 agggtccccgtattttctgagtgcaaacaggcttcccttag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space: 182784
Effective search space used: 182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
