BAC Information

Click to search

BAC

Clone NameMSMg01-343A21
Chromosome2 (Build37)
Map Location 43,883,917 - 44,039,822
singlet/doubletdoublet
Overlap geneArhgap15
Upstream geneLOC100041228, LOC100041245, Kynu
Downstream geneGtdc1, Zeb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343A21.T7 (MSMg01no343_a21.b1)MSMg01-343A21.TJ (MSMg01no343_a21.g1)
ACCAG456458AG456459
length756770
length of high quality
(start - end)		554 (28 - 581)399 (60 - 458)
definitionCHROMAT_FILE: MSMg01no343_a21.b1 PHD_FILE: MSMg01no343_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:44 2005CHROMAT_FILE: MSMg01no343_a21.g1 PHD_FILE: MSMg01no343_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,883,917 - 43,884,467)(44,039,424 - 44,039,822)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATCCCACTTCCT
AGATGATAAATATCAAGATGAGTTTCTTCTAAAATTATTAGTGCTGGGTG
CATTCCACTTCTCATGTCATATAATATGATGTTACCAGCATTCCCAGTTT
TAGAAAGCAGGAAGAATGTGGACAAACACAAAAAAGGAGCTCAGTTACGT
AAATATGATCTGTATTTACACAGCCTACACAGGACATGGAAGGGTAGAAT
TATTTCTGATTTGTATGATTATTCTCATCTTTGTTTTGCTTAGGTAGGAT
AAGATAGCTACGGATGAAATGCTTAGTTATGGATCAGCTATTGTCTCTAT
CATAATAAAATATAAAAGCTTAAATGGAAAATCAGTTGCAAAACCATTGT
TATTGTATTTTGTTTGTTTTGCTTCCCATGCAGAAGATCTAAACACTCAA
GCTGTCCCCATAAAATCCCTTCCTAAATCTTTGTTTTAAAGTATCTGATA
GGACGTCATTCCATGTGGGAATATTACATACAGCCACCGATTCAAGAGTA
ACTGAGAACTTATGTACAAAACATTCTTTACATATTGACAAATATTTCTA
AAAAGTGAATTTGGTTTTTTTTTGTTGTTGAAGGGTTCATGAGTGACCCT
TACCTCCGCAGAAATATGCCAGTTTCCAGTTTTTTGGGGGAGAATTTCCC
AAAATTTTTTTTATAAGCGTCCCACGGTTCCAGTGACATTTTTTTCCGGG
GATTCN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXAGTTGTAAAGTTTCCACAGATGCCACCTACTCCCTGTGACA
CAAATTCATTGAAAGGAGATTAATTTCTTCTTTTATGCCAAGGTGTTCTG
AACCCCACACATTTGGCTAGTGATGAGATAAAACTTCAGTATCAAGCATC
TTTAAAATTTTCCTGTATTTGATTTCTCTTTCTAGAAAAGTAATATAATT
ATCATCAAAGAAAATTCCATCATGTAGATGACAGAACCACATTTGAATAT
TAATATTTATAAAACAGTGTTACTAGTAAAACTAATTCTCATTTTATCTG
ACTTCTTGTCATCATAATTTACTAAATAGTAATTATCAGTTGATCGACTC
AAGTTTTTAATTTGCTCACATTTTTTTATTATCATCCTCATTGTGAAAAT
AAAGAGCCTGAGATTCAGAGATCAGAAGAGATCTTCNNAGATGTACNGAA
GAGTTCNGAATTAAGACACGAAGGGAAGATCCTTGGATTATTATCTGGGA
TGCCTTTCCCCACTGATAGGTTCGGGTTTTAATGGCTCAATAAAGGGTTT
AAGGCAGTTTTTATTGCCGGTTGGGGGAAATTTTTAAAAAAAAAAACCCC
CCCCGGGAAAAAATTTTGTTTTTAATAAAGGGCAAAATTTTTTCTTTTTA
ATGGAAGAACCCCCAAATGTGATTAAAAATGGCAATTGGGCAAACAAAAA
TCACGTTTTTTTTTGTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_a21.b1 MSMg01no343_a21.b1 CHROMAT_FILE:
MSMg01no343_a21.b1 PHD_FILE: MSMg01no343_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:44 2005
         (554 letters)



>mm_chr2_43883714_43884667
          Length = 954

 Score = 1035 bits (535), Expect = 0.0
 Identities = 547/551 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccatcccacttcctagatgataaatatcaagatgagtttcttctaaaattatta 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccatcccacttcctagatgataaatatcaagatgagtttcttctaaaattatta 263

                                                                       
Query: 64  gtgctgggtgcattccacttctcatgtcatataatatgatgttaccagcattcccagttt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtgctgggtgcattccacttctcatgtcatataatatgatgttaccagcattcccagttt 323

                                                                       
Query: 124 tagaaagcaggaagaatgtggacaaacacaaaaaaggagctcagttacgtaaatatgatc 183
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 324 tagaaagcaggaagaatgtggacaaacacaaaaaaggagctcagttacgtaaatgtgatc 383

                                                                       
Query: 184 tgtatttacacagcctacacaggacatggaagggtagaattatttctgatttgtatgatt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgtatttacacagcctacacaggacatggaagggtagaattatttctgatttgtatgatt 443

                                                                       
Query: 244 attctcatctttgttttgcttaggtaggataagatagctacggatgaaatgcttagttat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 444 attctcatctttgttttgcttaggtaggataagatagctacggatgaaatgcttagttac 503

                                                                       
Query: 304 ggatcagctattgtctctatcataataaaatataaaagcttaaatggaaaatcagttgca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggatcagctattgtctctatcataataaaatataaaagcttaaatggaaaatcagttgca 563

                                                                       
Query: 364 aaaccattgttattgtattttgtttgttttgcttcccatgcagaagatctaaacactcaa 423
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 564 aaaccattgttattgtattttgtttgttttgcttcccatgcagaagatttaaacactcaa 623

                                                                       
Query: 424 gctgtccccataaaatcccttcctaaatctttgttttaaagtatctgataggacgtcatt 483
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gctgtccccataaaatccctccctaaatctttgttttaaagtatctgataggacgtcatt 683

                                                                       
Query: 484 ccatgtgggaatattacatacagccaccgattcaagagtaactgagaacttatgtacaaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ccatgtgggaatattacatacagccaccgattcaagagtaactgagaacttatgtacaaa 743

                      
Query: 544 acattctttac 554
           |||||||||||
Sbjct: 744 acattctttac 754


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no343_a21.g1 MSMg01no343_a21.g1 CHROMAT_FILE:
MSMg01no343_a21.g1 PHD_FILE: MSMg01no343_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:44 2005
         (399 letters)



>mm_chr2_44039224_44040022
          Length = 799

 Score =  756 bits (391), Expect = 0.0
 Identities = 397/399 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttgtaaagtttccacagatgccacctactccctgtgacacaaattcattgaaaggaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 agttgtaaagtttccacagatgccacctactccctgtgacacaaattcattgaaaggaga 540

                                                                       
Query: 61  ttaatttcttcttttatgccaaggtgttctgaaccccacacatttggctagtgatgagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ttaatttcttcttttatgccaaggtgttctgaaccccacacatttggctagtgatgagat 480

                                                                       
Query: 121 aaaacttcagtatcaagcatctttaaaattttcctgtatttgatttctctttctagaaaa 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 479 aaaacttcagtatcaagcatctttaaaaatttcctgtatttgatttctctttctagaaaa 420

                                                                       
Query: 181 gtaatataattatcatcaaagaaaattccatcatgtagatgacagaaccacatttgaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gtaatataattatcatcaaagaaaattccatcatgtagatgacagaaccacatttgaata 360

                                                                       
Query: 241 ttaatatttataaaacagtgttactagtaaaactaattctcattttatctgacttcttgt 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ttaatatttataaaatagtgttactagtaaaactaattctcattttatctgacttcttgt 300

                                                                       
Query: 301 catcataatttactaaatagtaattatcagttgatcgactcaagtttttaatttgctcac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 catcataatttactaaatagtaattatcagttgatcgactcaagtttttaatttgctcac 240

                                                  
Query: 361 atttttttattatcatcctcattgtgaaaataaagagcc 399
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 atttttttattatcatcctcattgtgaaaataaagagcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space:   308100
Effective search space used:   308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |