BAC Information

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BAC

Clone NameMSMg01-343L21
Chromosome2 (Build37)
Map Location 20,426,486 - 20,426,869
singlet/doubletsinglet
Overlap geneEtl4
Upstream gene4921504E06Rik, LOC100041244, Otud1, LOC667564, LOC100041302, LOC433406, LOC654360, LOC667609
Downstream geneArhgap21, LOC433408, LOC675912, C130046B21Rik, 4933434I06Rik, Thnsl1, Gpr158
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343L21.T7 (MSMg01no343_l21.b1)MSMg01-343L21.TJ (MSMg01no343_l21.g1)
ACCAG456976AG456977
length793797
length of high quality
(start - end)		388 (33 - 420)376 (64 - 439)
definitionCHROMAT_FILE: MSMg01no343_l21.b1 PHD_FILE: MSMg01no343_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:41 2005CHROMAT_FILE: MSMg01no343_l21.g1 PHD_FILE: MSMg01no343_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCACTCAAG
TCTAGCTTAGTAGCCATGTGTTTCCTGGGGTTACATACAGGAGCATAGGT
GACTCAAAGGCAAGTGCATCACCAGAAATCCCACCCTAGCCTGGGTGACA
ACTCATCAAAGTTGTCTCCCAGGAACTCCCTGGCCAATTTGCATGAGGCT
ATCCTGGAGAAGCACTGGCCCCAGCAGTTGGTGCTGACTTTACAACGTTG
AGGAGGAGTCTTGTGTGTCTTATAACTTTCTGAGTTTCTGAGCCTTTGAA
GTTTCATTAGCTTCTTGAGTTGTAGGAACCTCCCTTAAGGAGTGAATGTT
TCAGTATGTGCCAATGGTTGTGGTCAGAGCTGGGATTANAGGTGGCTAAA
GCTGTTACTGCATGGACACCTCACAATGCCATAAGAGAGGGTCATATACA
AGGAACTGTGAGAAATAATTCCCAACCCACAGCTTCCCTGACCAGTGGTA
GAATCTTTTCTTCCACCCACTGGGGAGGGTTTCAAAAGGGTTTTGAAAAA
TGAAAATGGTTTTTATTTGATAGGTGGCTCCCCCTTGAAATTTCTGGTGT
TAAATTGTGCCCCTCGGTTTATGAGCCTTATAAACACTTCTCAGACCCCT
CGTATTTCATTTGCTTGCTAACTCTTGTCCGTTGGATGTCATTTCTCTTG
TATTAATAACATTTTAATCCTTATTAAGAATTTAATAACCACAGGTATCT
ATATTTAACTTTCACTATTCTGCCCCTACTCTACTCCCTCTTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCTATACCTGATAAACAGCTTCAATGCAGTAGCTGGAT
ATAAAAGTAACTCAAACAAATCAGTAGCCTTTCTCTACACAAAGGATAAA
CAGGCTGAGAAAGAAATTAGGGGCCGGGCGGTGGTGGTGCACGCCTTTAA
TCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTATGAGTTCGAGGCCAG
CCTGGTCTACAAAGTGAATTCCAGGACAGCCAGGGCTACACAGAGAAACC
CTGTCTCGAAAAAAGAAAAGAAAAAAAGAAAAGAAAAGAAAAGAAATTAG
GGAAATAACACCCTTCAAAGTAGTCAAAAATAATACAAAACACCTTGGTG
TGACTCTAACTAAGGAAGTGAAAGATCTGAATGATAAGAACTTCAAGTCT
TGGCCGGGCGGTGGTGGCACACGCCTTTAATCCCAAGTTCTTGGGAGGCA
GAGGCAGGTGGGATTTCTGAGGTCCAAGGGCCAGCCGGGTCTACAAATGG
AATTCCTGAAAGCCACGGGTTTTCTTGAAAAACATTCTCCTGGAAAAAAA
AAAAAAAATTCCCAGCCTCGAAAAAAAAAATTGTTGAAAACTCCCTCAAA
TGGGAGAACTCCCCCTTTTTTCAGTGGAGGAATTTTGGGGCGTTTTATAA
AAAACGGGATTTGTAAATACTTTTATTTTAGGAGGCAGCGGCGAAGTCTT
TTTTTGTGTGTTTTTCCCCCCCCCTAAATACCTTATGCTTTCCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_l21.b1 MSMg01no343_l21.b1 CHROMAT_FILE:
MSMg01no343_l21.b1 PHD_FILE: MSMg01no343_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:41 2005
         (388 letters)



>mm_chr2_20426282_20427069
          Length = 788

 Score =  690 bits (357), Expect = 0.0
 Identities = 377/384 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccactcaagtctagcttagtagccatgtgtttcctggggttacatacaggagcat 64
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccactcaagtctagcttagtaggcatgtgtttcctggggttacatacaggagcat 264

                                                                       
Query: 65  aggtgactcaaaggcaagtgcatcaccagaaatcccaccctagcctgggtgacaactcat 124
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 265 aggtgactcaaaggcaagtgcatcaccagaaatcccaccctagcctaggtgacaacacat 324

                                                                       
Query: 125 caaagttgtctcccaggaactccctggccaatttgcatgaggctatcctggagaagcact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 325 caaagttgtctcccaggaactccctggccaatttgcatgaggctatcctggagaaacact 384

                                                                       
Query: 185 ggccccagcagttggtgctgactttacaacgttgaggaggagtcttgtgtgtcttataac 244
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 385 ggccccagcagttggtgctgactttacaacattgaggaggagtcttgtgtgtcttataac 444

                                                                       
Query: 245 tttctgagtttctgagcctttgaagtttcattagcttcttgagttgtaggaacctccctt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttctgagtttctgagcctttgaagtttcattagcttcttgagttgtaggaacctccctt 504

                                                                       
Query: 305 aaggagtgaatgtttcagtatgtgccaatggttgtggtcagagctgggattanaggtggc 364
           ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 505 aaggagtgaatgtttcagtatgtgccaatggttatggtcagagctgggattaaaggtggc 564

                                   
Query: 365 taaagctgttactgcatggacacc 388
           ||||||||||||||||||||||||
Sbjct: 565 taaagctgttactgcatggacacc 588


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space:   295241
Effective search space used:   295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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