BAC Information

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BAC

Clone NameMSMg01-344E11
Chromosome2 (Build37)
Map Location 78,087,166 - 78,087,681
singlet/doubletsinglet
Overlap geneLOC667920, OTTMUSG00000016703
Upstream geneLOC623706, LOC667906, Zfp533, BC003993
Downstream geneLOC383717, LOC100040476, LOC100040494, 4930401B11Rik, Ube2e3, LOC100040526
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344E11.T7 (MSMg01no344_e11.b1)MSMg01-344E11.TJ (MSMg01no344_e11.g1)
ACCAG457382AG457383
length753744
length of high quality
(start - end)		516 (65 - 580)533 (69 - 601)
definitionCHROMAT_FILE: MSMg01no344_e11.b1 PHD_FILE: MSMg01no344_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:24 2005CHROMAT_FILE: MSMg01no344_e11.g1 PHD_FILE: MSMg01no344_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTACCTGTGACTGTGTAAAGGCTCTTCCTCATCACTCTTCTTTCAAGC
TTCAAACCTTCTAACACTAACTTGTCCTTGCCTGGCCTGAGAGCTGCCAT
GGTGGCTGAGAACTCCAAGCTTCCCCCGATGGATTCTGGAAATCTCTCAT
CCTGGTTTTCCATGCCAGTTTCCCCTAAGTTCACAAAGAGCTGCACCTCA
GGGGCTACATGGAGTTCTAGCTAGCATGCTCTTGGCTGTGTGTCTTCCAT
TAAGAGTCTTGTTTCTGATACACGGCTCATGGATTCGTTTCCTTCGGGTA
ACTGAATCTATTGGATGGCTCTGAAGTTTCTGTCACTTCCCAATGGCATT
TACCTTTCCCGGCCACCATTTGTGTCTGGGTGTGGGTGTCACAGTCAGCT
TTGGGGTTTCCTAACAGTGAATTTACAAGCCTGTTGGAAATTCCTTTCAT
CTGTTTTTGCTATTGTTACATCTGGCTCTCATCGCTTATAAATCTCACAG
TACAGTGTTAACATGATGACTTCCTGGGAATCATTTCTTGCCAATCTATA
ACTAAAAAATTCTCTTTTTATTTGCTTTTGGTTTTCCTGGCCCCGGTTTT
TTCATTTCTCCTTGTTGATCAATTGTGGCTCACCCCGGGGGTGGGAAAAA
TTCCCCTCGGGAGGTTTTTTTCCTGCCCCCCATCAATAGATCAAATTATT
GGN

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGCTGAGAAGCA
CCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAA
CAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAAT
TCAGGTGACAGCAGATGCTGGCGTGAATGTGGAGAAAGAGGTACACTCCT
CCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCT
GGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAGCAATA
CCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGGACAC
ATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGA
AAGTACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTAC
ATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAA
ATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGATGTAA
CACAATCACAAAGAAACTCACACAATATGTACTCACTGATAAGTGGATAT
TAGCCCCCAACCTACGATACCCAAGATATAAGATATACTTTTGCTCAACA
CTTGAAATTCAAAAAGAATGAAGATTGAACGGTGGACCCTATGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_e11.b1 MSMg01no344_e11.b1 CHROMAT_FILE:
MSMg01no344_e11.b1 PHD_FILE: MSMg01no344_e11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:24 2005
         (516 letters)



>mm_chr2_78086966_78087881
          Length = 916

 Score =  959 bits (496), Expect = 0.0
 Identities = 511/516 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgtaaaggctcttcctcatcactcttctttcaagcttcaaaccttctaacactaacttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgtaaaggctcttcctcatcactcttctttcaagcttcaaaccttctaacactaacttg 260

                                                                       
Query: 61  tccttgcctggcctgagagctgccatggtggctgagaactccaagcttcccccgatggat 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 tccttgcctggcctgagagctgccatggtggctgagagctccaagcttcccccgatggat 320

                                                                       
Query: 121 tctggaaatctctcatcctggttttccatgccagtttcccctaagttcacaaagagctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctggaaatctctcatcctggttttccatgccagtttcccctaagttcacaaagagctgc 380

                                                                       
Query: 181 acctcaggggctacatggagttctagctagcatgctcttggctgtgtgtcttccattaag 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acctcagtggctacatggagttctagctagcatgctcttggctgtgtgtcttccattaag 440

                                                                       
Query: 241 agtcttgtttctgatacacggctcatggattcgtttccttcgggtaactgaatctattgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtcttgtttctgatacacggctcatggattcgtttccttcgggtaactgaatctattgg 500

                                                                       
Query: 301 atggctctgaagtttctgtcacttcccaatggcatttacctttcccggccaccatttgtg 360
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 501 atggctctgaagtttctgtcacttcccaatggcatttgcctttcccggccaccatttgtg 560

                                                                       
Query: 361 tctgggtgtgggtgtcacagtcagctttggggtttcctaacagtgaatttacaagcctgt 420
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 tctgggtgtgggtgtcacagtcagctttggggtttcctaacagtgaatttccaagcctgt 620

                                                                       
Query: 421 tggaaattcctttcatctgtttttgctattgttacatctggctctcatcgcttataaatc 480
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggaaattcctttcgtctgtttttgctattgttacatctggctctcatcgcttataaatc 680

                                               
Query: 481 tcacagtacagtgttaacatgatgacttcctgggaa 516
           ||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcacagtacagtgttaacatgatgacttcctgggaa 716


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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