BAC Information

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BAC

Clone NameMSMg01-344K08
Chromosome2 (Build37)
Map Location 172,386,120 - 172,386,426
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043744, Cbln4, Mc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c
Downstream geneLOC100043750, Bmp7, LOC100043751, Spo11, Rae1, Rbm38, Ctcfl, EG619800, Pck1, Zbp1, Tmepai, 1700021F07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344K08.T7 (MSMg01no344_k08.b1)MSMg01-344K08.TJ (MSMg01no344_k08.g1)
ACCAG457662AG457663
length738750
length of high quality
(start - end)
426 (73 - 498)86 (183 - 268)
definitionCHROMAT_FILE: MSMg01no344_k08.b1 PHD_FILE: MSMg01no344_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:53 2005CHROMAT_FILE: MSMg01no344_k08.g1 PHD_FILE: MSMg01no344_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTGCAGTTTGCGCCTTCAGACACACTGGTTTTCTTTCCTTCATCA
AGCTGGGACATAGGAACCTCCTAAAGAGTACTTCTCCCAGAGGGCAGCGA
CAACATATGCCTTTAAAAAGACAAGCCCACAGTTGGGCATGGTAGTGCAT
GCCTATAATCCCAACCCCTCCCTCCCTCTCCACCCCTCAGAGGTAGAGAC
AGGAAGATTGCAAGGATGAGGCCAGCCTGGGCTATGCATAGTGTATTCCA
GGCCAGTCACAGGTACACAGCATTATTTGTTTTAAAAAATTAATGAGCCA
CCAGGGAGATGGCTCAGTCAGTGTTTGCTCCTCAGGTCTAAGTTTGGATC
CCTGGTTCCCCCCTTAAAAACAAAACAAACACCACCACCACCGGGCTGGC
CCGGAGAGATGCCTCAGTGGTTAAGAGCACTTGCGGTTCTTGCGGGGGAC
CTGGGCTCATATCTTTCAACCCAGCTCTGGTGGCTCACAACCACCTGTAA
TTCTAATTAAATACAGGAAGTACATACCTGCAAGCATTCACTCTGACTCT
GAATGTAATTACCGTAACTACACCTCTTTTTATAGGCTAGGCCCATCGGT
CCCACTCTTGGTATGTTTTGTCCGTCCATCGTTTTATTTAAAATTTCCCT
GTTACCAAGGTTTTTTCTATTGTAAAGCCCTTGAATTG
CCAATAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTGAAAATGAGCCACAGACACTGTA
AGGCCGGAAGGCTGCAGTGTTCAGCGTGGCTGCGTGTCAAAACTATAGTT
CAGAGAGGTCCAAGGCCACCCTGCCCTGCTGGCCCTTCCACCCCACAGGG
TCTGCCACCTATGTCCCTGGCTTCAGCGGAAGCCATTGCTTGTCCCCAGC
TGTGAACTTGTTTATTTTAGAAGCAAAGGAGTTTGGTTGGGGAAAGGGGA
GTTTGTGAAAGATATAAGGACCTTTATACAGGTTTGGACAGAATCAAGAT
CTCTGACCCCTGATGTGTATAGAGTTATTATAGAATATTATATATTATCA
ATATAGTTGTATTCTCTTCTACTTCTGTTATATTGTCTTGTTAACTTGTG
CTCAAATTCAATGTTTACTTTACTTTCTCCTTAATTTACCAACATGTTCA
ATACATTAATAACCCATTTTGAGACTGTTTTGTTAACACAAATCGTCTAT
CCTTGTTTTTCCCCATTCTTCAAGGCCCCTTTTTTTTTTTTTTCCTCATT
CTTCCTCCCTTTTCTTTATCTATGTTTTACTTATTCTATTTTTTCTTTTT
TCCTTTTCCCCGTTCAACACATTTCCTCCCAATTTTATATTTTTTTTATA
TTTATTCTTTCCCCCTCTTATTATACTTTATTNCCTTTCTCTCTTTCTCT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_k08.b1 MSMg01no344_k08.b1 CHROMAT_FILE:
MSMg01no344_k08.b1 PHD_FILE: MSMg01no344_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:53 2005
         (426 letters)



>mm_chr2_172386120_172386944
          Length = 825

 Score =  526 bits (272), Expect = e-153
 Identities = 300/310 (96%), Gaps = 3/310 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agacacactggttttctttccttcatcaagctgggacataggaacctcctaaagagtact 60
           ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 307 agacacactggttttctttccttcagcaagctgggacataggaacctcttaaagagtact 248

                                                                       
Query: 61  tctcccagagggcagcgacaacatatgcctttaaaaagacaagcccacagttgggcatgg 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tctcccagagggcag-gacaacatatgcctttaaaaagacaagcccacagttgggcatgg 189

                                                                       
Query: 121 tagtgcatgcctataatcccaacccctccctccctctccacccctcagaggtagagacag 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 tagtgcatgcctctaatcccaacccctccctccctctccacccctcagaggtagagacag 129

                                                                       
Query: 181 gaagattgcaaggatgaggccagcctgggctatgcatagtgtattccaggccagtcacag 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 128 gaagattgcaaggatgaggccagcctgggctatgcatagtgtatttcaggccagtcacag 69

                                                                       
Query: 241 gtacacagcattatttgttttaaaaaattaatgagccaccagggagatggctcagtcagt 300
           ||||||||||  |||||||| |||||||||||||||||||||||||||||||  ||||||
Sbjct: 68  gtacacagcaagatttgtttcaaaaaattaatgagccaccagggagatggct--gtcagt 11

                     
Query: 301 gtttgctcct 310
           ||||||||||
Sbjct: 10  gtttgctcct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 825
Length adjustment: 9
Effective length of query: 417
Effective length of database: 816
Effective search space:   340272
Effective search space used:   340272
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)