BAC Information

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BAC

Clone NameMSMg01-344O08
Chromosome2 (Build37)
Map Location 19,298,169 - 19,298,417
singlet/doubletsinglet
Overlap geneMsrb2
Upstream geneDnajc1, LOC625815, Commd3, Bmi1, EG667477, LOC100041448, BC061194, LOC667493, LOC100041479, Pip5k2a, 4930426L09Rik, LOC667521, Armc3
Downstream geneLOC100041196, Ptf1a, LOC100041534, 4921504E06Rik, LOC100041244, Otud1, LOC667564, LOC100041302, LOC433406, LOC654360, LOC667609, Etl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344O08.T7 (MSMg01no344_o08.b1)MSMg01-344O08.TJ (MSMg01no344_o08.g1)
ACCAG457849AG457850
length732752
length of high quality
(start - end)
478 (81 - 558)249 (70 - 318)
definitionCHROMAT_FILE: MSMg01no344_o08.b1 PHD_FILE: MSMg01no344_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:14 2005CHROMAT_FILE: MSMg01no344_o08.g1 PHD_FILE: MSMg01no344_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGC
GGAATTCAGTGGTTACTCTATCAGACCTTCAAAGAAGACCTAATGCCAAT
ACTCTTCAAACTATTCCACAAAATAGAAACAGAAGAAACACTACCCAAAT
CCTTCTATGAAGCTACAGTTACTCTGCGTATTCTCCCTTGGAGATGGAAT
GGTTTCTGTCTAATCAGGAACCTGACACAATTTCCTTTCATAGAGGACTA
CATAAGAGATATTTTCTACTTCTATCATGTTTAATGTTCCAAATAGATTT
TAAAAGTTGGTTGAATGCATATTACTTTTAGCTTCAGAAGATATCATGTA
CATTAAAGAGGCATTTAACTATTATAAATTATTTTGATGACTTAAAAAAT
GTCAATACTGAGTTATATATTTTAAAATAAATTTTATTATTTAAATATAA
AAAAGAATTAGTTTAAGTTGAGTTGAAGGCTTGAGTGTAAGACTTAAAAA
TTTTAAACTACAAGACAAAATACACAGAGTAAACCCTCCATGACATTTGT
CTGACAGTGATTACCATAATATTGCTTTTTAAATAAAGTCTCAATCATTT
GATTTTTTTCCCAATTTAAACTAGGTTCATATGCTGGGGAGAAAGCCTGT
TATCTCTTATTGTTTGACCAAGCACCCCAGCTGACCCTCCTTCTCTCCCA
ATAACCCAAAAATAATTGTCCTTCTTTTATGG
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTTCCGCGAAATTCTTGTGGTTTAAAAGCCAAAGGTTTCCTT
CCCCTACTGTGTGTCTCTGATGTGGGTTAGAGACTGTGGCCCTGCTATCT
GTTTTAATAAAGTCGGTTAATTATTATCTGAATTAAGTCTTTTTCTGGTG
GTCTTGAACTCCACAACAGTGCTATGGTGTCCTTATCCATTCACTGACAG
TATATCTCGCCTGGTCTCCTTATCCATTCACTGACGGTATATCTCGCCTG
GTCCCACTTCTAGCTGTTGTTGAGTAGTGCAGCAATAAACTTGAATGTGC
GCATCCCTGAGGTAGGACTTATAATCCCTTAGGTATGTAACCAGGAGTGC
TGCAGATGGTCTACCTGCTAGTTCTGGATAGTAGTTTCCATCAGGTCCAG
CTGTTATTAAGGACAGTATTGTACAGAGATGTCCTTTGAGGAAGGAGCTA
TTATTCGCTCTCTACTAATTATTCTCTTCGCCTGAGATTGTTCTGCTTTT
AGCCTGATATTGACTCTGTGTTCTATTCTAATTCCGCCACATTGGTTTGT
TTGATCTGCTTGATTCTTTGATAACTCCCTTGTATATCTCCCTCCTTGTT
CCCATTTCCTAATTGTCGCCTTTGCTCTATATTTTTTACCTCCCTTCTAT
TTTTCCTGTATTGTATATTTTTATTTGTTCTTTCTCCCACTTCGTCTTCT
TN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_o08.g1 MSMg01no344_o08.g1 CHROMAT_FILE:
MSMg01no344_o08.g1 PHD_FILE: MSMg01no344_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:14 2005
         (249 letters)



>mm_chr2_19297969_19298617
          Length = 649

 Score =  458 bits (237), Expect = e-133
 Identities = 246/249 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcttgtggtttaaaagccaaaggtttccttcccctactgtgtgtctctgatgtgggtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ttcttgtggtttaaaagccaaaggtttccttcccctactgtgtgtctctgatgtgggtta 390

                                                                       
Query: 61  gagactgtggccctgctatctgttttaataaagtcggttaattattatctgaattaagtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gagactgtggccctgctatctgttttaataaagtcggttaattattatctgaattaagtc 330

                                                                       
Query: 121 tttttctggtggtcttgaactccacaacagtgctatggtgtccttatccattcactgaca 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 329 tttttctggtggtcttgaactccacaacagtgctatggtctccttatccattcactgaca 270

                                                                       
Query: 181 gtatatctcgcctggtctccttatccattcactgacggtatatctcgcctggtcccactt 240
           |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 269 gtatatctcgcctggtctccttatccattcactgacagtatatctcgccaggtcccactt 210

                    
Query: 241 ctagctgtt 249
           |||||||||
Sbjct: 209 ctagctgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)