Query= MSMg01no344_p02.b1 MSMg01no344_p02.b1 CHROMAT_FILE:
MSMg01no344_p02.b1 PHD_FILE: MSMg01no344_p02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:17 2005
(496 letters)
>mm_chr2_127726448_127727343
Length = 896
Score = 592 bits (306), Expect = e-173
Identities = 384/448 (85%), Gaps = 58/448 (12%)
Strand = Plus / Minus
Query: 49 tccttatagcaacagaacacacagagcccaagtcttgttctctcaaaatgttctataaga 108
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 tccttatagcaacaaaacacacagagcccaagtcttgttctctcaaaatgttctataaga 837
Query: 109 agagaaaccagggttctttggcaaatgatttaccctggtgcagggaaaatataagatcag 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 agagaaaccagggttctttggcaaatgatttaccctggtgcagggaaaatataagatcag 777
Query: 169 tgtggaatatcctgtagtgctagaaagaaagacctaacacacacacacacacacacacac 228
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 tgtggaatatcctgtagtgctagaaagaaagacctaacacacacacacac---------- 727
Query: 229 acacacacacacacacacacacacactcacagagagagagagagagagagagagagagag 288
||||||||||||
Sbjct: 726 ------------------------------------------------agagagagagag 715
Query: 289 agagagagagagagagagccatgtacaagagactcaagccaattgaaagaatttccagca 348
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 714 agagagagagagagagagccatgtacaagagactcaagccaattgaaagaatttccagta 655
Query: 349 cccacaactgaaataatttaagtaacaaaataaaatgaagtagaggtagattctaaccca 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 ggcacaactgaaataatttaagtaacaaaataaaatgaagtagaggtagattctaaccca 595
Query: 409 aaacattaattaaacttccataaatatctaatgatacaaagaagtgatcaagcagatgtg 468
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 aaacattaaataaacttccataaatatctaatgatacaaagaagtgatcaagcagatgtg 535
Query: 469 gcggtacactcctgtaacccaaggcctg 496
||||||||| ||||||||||||||||||
Sbjct: 534 gcggtacacacctgtaacccaaggcctg 507
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space: 430596
Effective search space used: 430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no344_p02.g1 MSMg01no344_p02.g1 CHROMAT_FILE:
MSMg01no344_p02.g1 PHD_FILE: MSMg01no344_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:17 2005
(509 letters)
>mm_chr2_127564035_127564940
Length = 906
Score = 735 bits (380), Expect = 0.0
Identities = 494/574 (86%), Gaps = 68/574 (11%)
Strand = Plus / Plus
Query: 1 atcatgaaaaaacaaaaacgaaacaacaacaacaacaa----aaaaaacccaccatcacc 56
|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 136 atcatgaaaaaacaaaaacgaaacaacaacaacaacaacaacaaaaaacccaccaccacc 195
Query: 57 tctttttcacacacaaaggccatgggcacagacacacaagacacatatacacagacagac 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 tctttttcacacacaaaggccatgggcacagacacacaagacacatatacacagacagac 255
Query: 117 agagacaga------------------cagacagacagacagacacacacac-------- 150
||||||||| |||||||||||||||||||||||||
Sbjct: 256 agagacagagacagacagacagacagacagacagacagacagacacacacacacacacac 315
Query: 151 -----------------------------------ggattctacagagaaatctgacttg 175
|||||||||||||||||||||||||
Sbjct: 316 acacacacacacacacacacacacacacacaccatggattctacagagaaatctgacttg 375
Query: 176 gcagtgggtagtagtgatgtggccataggttcctttaaaaacaggcctccaggagacaaa 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gcagtgggtagtagtgatgtggccataggttcctttaaaaacaggcctccaggagacaaa 435
Query: 236 gtggggacgattctatggctgggtaggaaagtccctggagtccctgtgctcatctgacca 295
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 436 gtggggacgattctatggctgggtaggaaagtctctggagtccctgtgctcatctgacca 495
Query: 296 ggcagagcttccagggaaaatcagctggagagcgcttcggaaggacaccacccgccttag 355
||||||| ||||||||||||||||||||||||| |||||||||| | | | |||||||
Sbjct: 496 ggcagagtttccagggaaaatcagctggagagc--ttcggaaggagaagagctgccttag 553
Query: 356 catgatgggcagaaaaggcgtcctctcttcagtccctaccagtcactggggacagagggg 415
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 554 catgatgggcagaaaaggcgtcctctcttcagtccctaccagtcactgaggacagagggg 613
Query: 416 tgacacagaggggtgcagtgaatgtttttttttcaaggccaagttcccacttgtctgtca 475
| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 614 taacacagaggggtgcagtgaatgtttttttt-caaggccaagttcccacttgtctgtta 672
Query: 476 taatttggaccaggaatccaaggcccattgtggt 509
|||||||| |||||||||||||||||||||||||
Sbjct: 673 taatttgggccaggaatccaaggcccattgtggt 706
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 906
Length adjustment: 10
Effective length of query: 499
Effective length of database: 896
Effective search space: 447104
Effective search space used: 447104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
