BAC Information

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BAC

Clone NameMSMg01-345C23
Chromosome2 (Build37)
Map Location 109,482,896 - 109,483,275
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC623003, LOC100043423, LOC623031, Mett5d1, Kif18a
Downstream geneBdnf, LOC100043427, Lin7c, Lgr4, Ccdc34, LOC668797, Bbox1, 1110018M03Rik, LOC668799, Slc5a12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345C23.T7 (MSMg01no345_c23.b1)MSMg01-345C23.TJ (MSMg01no345_c23.g1)
ACCAG458068AG458069
length753742
length of high quality
(start - end)		458 (36 - 493)393 (56 - 448)
definitionCHROMAT_FILE: MSMg01no345_c23.b1 PHD_FILE: MSMg01no345_c23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:35 2005CHROMAT_FILE: MSMg01no345_c23.g1 PHD_FILE: MSMg01no345_c23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGT
TCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCC
ACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCTGATTT
AAGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTAT
TGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCAT
TTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAA
TTTTTCCCCTGTACCCATATCTTCGAGACTTTTCCCTACTTTCTCCACTA
TAAATTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTTATCCACTTAGAT
TTGACCTTAGTACAAGGAGATAGGAATGGATCAATTCACATTCTTCTACA
TGATAACTGCCAGTTGTGCCAGCACCATTTTTTGAAAATGCTGTCTTTTT
TCCACTGGATGTTTTTTGCTCCCTTGTCAAAGATCAAGTGACCATAANTG
TGTGGGTTCATCTCAGGGGCTTTCATTCTGTTTCATGGGCTACTTTGCCT
GCCATAATACCAGAACCTGCGGTTTTTATTACAATTGTTCCGTGAGAACG
TTTTAGTCAGGCTGGGGGTTTCCCCCAAGGTCTTTTTTCTTTGGAAAAAA
TTTTTTTTCTACCGTTTTTTTTTTTTTCCAAAATATTGAGAATGCCCTCT
CCN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXAGACGTTAGAGTGTGCTCAATTATGACCTGGAAACTCTCTTACTC
CATGCAAGTAACTCTTGCATCTGCTCCCAGGGATGGGGTTATGCTAGGGT
CTGTTTCTATACCTTTAAGATCATTGGCTATGGTTTTAGATTGGCAAGAC
TAATTAAGTTTAAATTAAAGAGATACAGTTCTCTTGTCAGGTTTGGTGGT
ACATACCTTTAATCCCAGCAGATCTAAGGGCAAGTGGATCTCTGTGTTTT
TGAGGCCAGCCTGCTCTAAAGTTCAATGCCTCCTTAACTGCACAATGGGA
TTGCATTTCTGAAATAAACAAACAACAAAACAAACACAGGACAAGATTGC
AAACCTGTAATCTATACAATACAAATTTGTAATGTTTTCTTTTCTTTTGT
TGAAAATAGATTTTTCCCCACACACTATATCCCAATTAGCTTTTCCTTCT
TCTGATCCTAGNCTTCCAACTCTGGTCCCATAAGATCAATGCCCTTTCTG
TCTCTTCATAAAAAAAAACAGGCTTCTAAGGGGTTACCTTAGATTACTTA
AACAAACCCAACCAAACCAAACCAACCCAATGGGCTTGGTTAGAAACAAA
TAAATAAACCTTCCCAAGGAAAAAACCTGTTTTAGGCCAAAACCAAAGGT
GATTTCAAACCCCCCTGTTTGCCCTACTTTGAATCCCCAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_c23.g1 MSMg01no345_c23.g1 CHROMAT_FILE:
MSMg01no345_c23.g1 PHD_FILE: MSMg01no345_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:35 2005
         (393 letters)



>mm_chr2_109482896_109483688
          Length = 793

 Score =  712 bits (368), Expect = 0.0
 Identities = 377/380 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agacgttagagtgtgctcaattatgacctggaaactctcttactccatgcaagtaactct 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 380 agacgttagagtgtgctcaattatgacctggaaactctcttactccatgcaagtaactgt 321

                                                                       
Query: 61  tgcatctgctcccagggatggggttatgctagggtctgtttctatacctttaagatcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgcatctgctcccagggatggggttatgctagggtctgtttctatacctttaagatcatt 261

                                                                       
Query: 121 ggctatggttttagattggcaagactaattaagtttaaattaaagagatacagttctctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ggctatggttttagattggcaagactaattaagtttaaattaaagagatacagttctctt 201

                                                                       
Query: 181 gtcaggtttggtggtacatacctttaatcccagcagatctaagggcaagtggatctctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gtcaggtttggtggtacatacctttaatcccagcagatctaagggcaagtggatctctgt 141

                                                                       
Query: 241 gtttttgaggccagcctgctctaaagttcaatgcctccttaactgcacaatgggattgca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 140 gtttttgaggccagcctgctctaaagttcaatgcctccttaactgcacagtgggattgca 81

                                                                       
Query: 301 tttctgaaataaacaaacaacaaaacaaacacaggacaagattgcaaacctgtaatctat 360
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80  tttctgaaataagcaaacaacaaaacaaacacaggacaagattgcaaacctgtaatctat 21

                               
Query: 361 acaatacaaatttgtaatgt 380
           ||||||||||||||||||||
Sbjct: 20  acaatacaaatttgtaatgt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space:   301056
Effective search space used:   301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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