BAC Information

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BAC

Clone NameMSMg01-345G04
Chromosome2 (Build37)
Map Location 169,659,290 - 169,659,510
singlet/doubletsinglet
Overlap geneTshz2
Upstream geneZfp64, LOC100043909, EG668954
Downstream geneLOC100043737, LOC100043910, Zfp217, Silg111, LOC100043739, Bcas1, LOC228916, Cyp24a1, Pfdn4, 4930470P17Rik, Dok5
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345G04.T7 (MSMg01no345_g04.b1)MSMg01-345G04.TJ (MSMg01no345_g04.g1)
ACCAG458221AG458222
length864762
length of high quality
(start - end)
31 (88 - 118)229 (88 - 316)
definitionCHROMAT_FILE: MSMg01no345_g04.b1 PHD_FILE: MSMg01no345_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:49 2005CHROMAT_FILE: MSMg01no345_g04.g1 PHD_FILE: MSMg01no345_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAACAACATCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCCCAG
AAAATCCGCGGNAATTCAAGGATTATCCCCGTGAGTCAAGAAACTCAGGT
CAATTTTCTGTGTGTGTGTGTGTCTGTGTCTCTCTCTCTCTGTACATCTC
CCCATCACACCCCACCCCAAACAACCCCACTCACCCCTCCCACTACAAAT
AACTCCCACCCCCCCACACTCCTTTCACTACACAACAAACAAACAATATC
ACTCCTCTAACCACAAAACATACCCCCAAACCCCTCTCCCACCCTCAACC
TCACCCCTTTCCACCCCCACTCCACACAAAACAACCTTTTTTTTTAAACC
TCAAACCCCTACCCTCCAAACCCTCAACATCTCACACCCCACCCACACCT
AACCATAAACCCACCCCCACCACCCAATAAAACACCAAACGTCCCCCCCC
CCAAAACACACACCCTCCAACACCATCTACCACCCCTCCACACTCTACCA
CCCACCCCAACACCTCACTACCCAACTCCCACCTCAACATCAAATCACAC
CACACCCCTCCAAACACAAAACCACCCCAAACCCAACACAACACCCACAC
CCCCCCCACCCCCAAAATCACCATACTCCAACTACACACAAACAAACACC
ACCCCAAACCCCCCCACACACCCCAAAACCAAAAACAAAAAAACACACTC
ACCTATCACAAAACACACAACACACTTCCTCTTCCCCTACTCCCTCCCCC
CACATCCACACCCCCACCTCTCTCTAATTCTTCCCCCCCCACCAACACCC
CCACAATACACCCACCACCACCCCCATCCCCACACCCCCCCACCTCCACA
CCCAAACCACACAA
TTTTTTTCTATGAAGTGCGCGAGCCTGGCGGGGGGCGGTGXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACTTGTGTGTGTGT
GTACCGAGAGCAGTGCCAATGGATTGCCGGTAGGCAGGCTCATCTTCAAG
GGTAACTCCGTTCCAAAAAGGACCGGTGTCGGCCTGTGTTGTAAGGCAGT
TGCTGCTGTGCAAACTCTGTCCATCACCCACCTCCAGCCTTGCTAGCACA
CTCCGTTATTACACTGCTGATCCAAGGAATGACCCAGGCACTGACAATGG
TGATGAGAGTGGTTCATCTCTTGGGAGTCATCGGTGACATTCAGAGCCCC
CTTCCCTTTCTGGGAGTGAGAGGAATTCTCTTTTCTCAATAATATGTGTG
GAGTATCCATGACTGTCTGCTGGTCCAAATTCACAGACATTTTATCTGTT
ATCATGTTGAGACTCTGCTACTAATCCTCTATTTTTTAAGTTTTATTACT
ATTATTCCACCCATTGAAATGTTTATTCTGTATGTCACGTCTTTAAATAA
ATTTAATATTTTCCTAATATATCCTGTATTACCTCTTATAAATTCTTATC
CTATGCTTTTTGATTTTCTTTTTACTTACCCCTACAATTAATTTTGATTA
TCTATGTTATTTATATAAAATTTTATACTTCTTTATTTTGAACTCTTTTC
ATATTATCTTTTTTTTTTCCTCTTCTAATATACTCAATACGCCAATTAAT
TTAATAACTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_g04.g1 MSMg01no345_g04.g1 CHROMAT_FILE:
MSMg01no345_g04.g1 PHD_FILE: MSMg01no345_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:50 2005
         (229 letters)



>mm_chr2_169659086_169659714
          Length = 629

 Score =  412 bits (213), Expect = e-120
 Identities = 219/221 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   tgtgtgtgtgtaccgagagcagtgccaatggattgccggtaggcaggctcatcttcaagg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tgtgtgtgtgtaccgagagcagtgccaatggattgccggtaggcaggctcatcttcaagg 264

                                                                       
Query: 65  gtaactccgttccaaaaaggaccggtgtcggcctgtgttgtaaggcagttgctgctgtgc 124
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 265 gtaactccgttccaaaaaggaccggtgtcagcctgtgttgtaaggcagttgctgctgtgc 324

                                                                       
Query: 125 aaactctgtccatcacccacctccagccttgctagcacactccgttattacactgctgat 184
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaccctgtccatcacccacctccagccttgctagcacactccgttattacactgctgat 384

                                                    
Query: 185 ccaaggaatgacccaggcactgacaatggtgatgagagtgg 225
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccaaggaatgacccaggcactgacaatggtgatgagagtgg 425


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space:   136400
Effective search space used:   136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)