NNNTTCTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTAGGACTTCCGAGTGTTAGGGTAAGGACTTAGTA
GAAAAGTCTGAATTAGAGCCCAGAAGAGCTGACATACATTTCCACCACAC
TGCATGAACTCAAAGCAAATCTGAAGCCGCATGCTGAGCTACAAAATCTT
GATTATTAATAATTAAAAACAAAAAGAAAATGTCCATGTTTAATCTGAAA
GGTGACACAGGTACAGGGAGGTTTACTGAATGGCTTTTTTAAAAATCATA
CACTGACTTTGGCCTTTTAAATGTAACTCATTAAAGGATCAAATCCCACA
AGTCCTTTTGTTGTTGTTGTTGTGTTCTTTTTTTTTTTCAGTTGTAATTG
CAACCTCAGTACTCGTTAGCATTTTCAGAATTAGTTACAGGACCAGCTAT
CTCATGAATGTAATTATGAGATCTTTGATGTTCTGATTTGATGATCAAGC
ATTCAGCATGTGAATGTCACAGAGTGGCAGAGGCAGGAAACCAGATTGTC
TGTGTCAAGGTTTGGCCATGTAGGTTCCATATTCTGTTACTGTTACATAT
TCCCAACCAACCAACATAAACTGCCCTGTTCTATCATTGCCGATAACCAT
ATCCCTGCTGTTCCTTATTGGGGAAAATCCAAAAGAATGGGAACCCGGGG
AAATATTTTCCGGGTGAAAAAATTATGGAATTTCCCCCCACAAAAGAAAT
TCTCCCACT

TCTTTTCTCACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGTTTCAGGAAA
CACAGAATGAAGCCATCAAGAAGGAGAAGGAGCTGCAGCAGGAGGAGGTC
ATGGTGGAAATGGAGGAGGAATAATACCTGAAGAAGAGGAGACTAGCAGC
AGGAGGAGGGGGATTACTAAAAGCAGCAGCAGAGGAAGAAAGAAGAAGAT
GATGAAGAAGATGATGATGGAGGAAGAGGAGGAGTAGCATTTCTCCTTTT
TTTTTTCCCCCTCTTCTCTTTTCTTTTTTCTTCTTTTTTTTTTTTTTCTC
TTCCCTTCCTTTCTNTCTTCTCTCTTTTTTTTTGTTTTGTGGGGTCGGGG
GGTCGGGCGGGGGGGGGGGGGGTCGGCTGGGGTTGGGGTTGGCTGGCCTC
CGTTCGTTGGTTCTCTTGCTTCGTTCTTTTTTTCTTCTCTGCCTCGTTCT
TCTTTTTTTTTCGTCCTCTCTGTTTCCCCTTTCGTTATTCCTCGCGTTCT
TTTCCTGTGTTTGGGGTCTGTGGGCTGGGGGGGCTGGTGGTATCCCCTTT
TTATTCGTACCTTTTCTCCTCTTTTCCCTTTTCTTTTCCCACCTCCATTA
TTCGTTCTTCTCTGCTTCTTTACGTCTCGCGTGGGGCTCTCTCTCTTCTC
TTGGCCCCGTCCCTTCTTCTTTTGGTTGCCTCGGTTCGGCGCTGTATCCT
GTTTATGTTTTTTCCGCCTTTCTTTTTTTGCTTCGTTTTTCCTTAGTGAC
GACTGACCTGTCTCGTGGCGGGCTGGGTTTCCTTCATTACCTTCCGTTCT
CTCTTTN

Query= MSMg01no345_k12.b1 MSMg01no345_k12.b1 CHROMAT_FILE:
MSMg01no345_k12.b1 PHD_FILE: MSMg01no345_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:09 2005
         (476 letters)



>mm_chr2_63059525_63060402
          Length = 878

 Score =  859 bits (444), Expect = 0.0
 Identities = 466/474 (98%), Gaps = 2/474 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaggacttccgagtgttagggtaaggacttagtagaaaagtctgaattagagcc 64
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaggacttccgagggttagggtaaggacttagtagaaaagtctgaattagagcc 264

                                                                       
Query: 65  cagaagagctgacatacatttccaccacactgcatgaactcaaagcaaatctgaagccgc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagaagagctgacatacatttccaccacactgcatgaactcaaagcaaatctgaagccgc 324

                                                                       
Query: 125 atgctgagctacaaaatcttgattattaataattaaaaacaaaaagaaaatgtccatgtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgctgagctacaaaatcttgattattaataattaaaaacaaaaagaaaatgtccatgtt 384

                                                                       
Query: 185 taatctgaaaggtgacacaggtacagggaggtttactgaatggcttttttaaaaatcata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 385 taatctgaaaggtgacacaggtacagggaggtttactgaatggctttttaaaaaatcata 444

                                                                       
Query: 245 cactgactttggccttttaaatgtaactcattaaaggatcaaatcccacaagtccttttg 304
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caatgactttggccttttaaatgtaactcattaaaggatcaaatcccacaagtccttttg 504

                                                                       
Query: 305 ttgttgttgttgtgttctttttttttttc--agttgtaattgcaacctcagtactcgtta 362
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||
Sbjct: 505 ttgttgttgttgtgttctttttttttttctcagttgtaattgcaacctcagtacttgtta 564

                                                                       
Query: 363 gcattttcagaattagttacaggaccagctatctcatgaatgtaattatgagatctttga 422
           |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 565 gcattttcagtattagttacaggaccagctatcttatgaatgtaattatgagatctttga 624

                                                                 
Query: 423 tgttctgatttgatgatcaagcattcagcatgtgaatgtcacagagtggcagag 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgttctgatttgatgatcaagcattcagcatgtgaatgtcacagagtggcagag 678


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 878
Length adjustment: 10
Effective length of query: 466
Effective length of database: 868
Effective search space:   404488
Effective search space used:   404488
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)