Query= MSMg01no345_m03.b1 MSMg01no345_m03.b1 CHROMAT_FILE:
MSMg01no345_m03.b1 PHD_FILE: MSMg01no345_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:17 2005
(517 letters)
>mm_chr2_123833747_123834663
Length = 917
Score = 922 bits (477), Expect = 0.0
Identities = 501/509 (98%)
Strand = Plus / Minus
Query: 9 gaattcacctattttcttatacattttttatggcaaaggggaaacacattactacctcta 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 gaattcacctattttcttatacattttttatggcaaaggggaaacacattactacctcta 658
Query: 69 gtaggtagaagccgtaatcacttgcttgcttgataaacacactgtttcttgtgtaccagg 128
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 gtaggtagaagccataatcacttgcttgcttgataaacacactgtttcttgtgtaccagg 598
Query: 129 tgtccaggcacatgggaacaaaaaagtcaatgagttgaaaattcttgatcctcttattct 188
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 597 tgtccaggcacatgggaacaaaaaagtcaatgagttgaaaattcttgatcctgttattct 538
Query: 189 agtagagcgcagtctgtagagctcattgatgatggctttgccattgtaacagggctgtga 248
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 537 agtagagcgcagtctgtagagctcattgatgatggctttgccattgtaacaggactgtga 478
Query: 249 cttgctgatgttgctaagctgaccctgaccttcttttctccattttccatccactgggac 308
|||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||
Sbjct: 477 cttgctgatgttgctaagctgaccatgacctccttttctccattctccatccactgggac 418
Query: 309 tttttgtttttgatcacagagatgggttaagatataagctcttacatacatgtgccccac 368
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 417 tttttgtttttgatcacagagatgggttaaaatatatgctcttacatacatgtgccccac 358
Query: 369 atgtatttattagctaagcaacactgcaagtctttcttgtcaaagtcagaagatgaagtg 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 atgtatttattagctaagcaacactgcaagtctttcttgtcaaagtcagaagatgaagtg 298
Query: 429 tgacatcttaactgtaatgattaatggatgctattactcactgcagggaataggggtttg 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tgacatcttaactgtaatgattaatggatgctattactcactgcagggaataggggtttg 238
Query: 489 gtcaagaactgtgaggaactctttaaaag 517
|||||||||||||||||||||||||||||
Sbjct: 237 gtcaagaactgtgaggaactctttaaaag 209
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no345_m03.g1 MSMg01no345_m03.g1 CHROMAT_FILE:
MSMg01no345_m03.g1 PHD_FILE: MSMg01no345_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:17 2005
(581 letters)
>mm_chr2_123631014_123631994
Length = 981
Score = 992 bits (513), Expect = 0.0
Identities = 537/548 (97%), Gaps = 5/548 (0%)
Strand = Plus / Plus
Query: 38 taaataaataaataaatatagctttggatccttgggatctaaaaatacattggtttattt 97
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 taaataaataaataaaaatagctttggatccttgggatctaaaaatacattggtttattt 292
Query: 98 tagtggcataatttcaaaaggagagaattttaaaaaataacaacaacaactaca-----a 152
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 293 tagtggcataatttcaaaaggagagaattttaaaaaataacaacaacaacaacaacaaca 352
Query: 153 aaagaaacaaagaaacagaaataaaaagcaaaaactaccaagtgaagcccctggtagtca 212
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 aaagagacaaagaaacagaaataaaaagcaaaaactaccaagtgaagcccctggtagtca 412
Query: 213 ttcactaactttattgggcaaaaccagagcgagctttctgtgtgagggatgtagtgggcc 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ttcactaactttattgggcaaaaccagagcgagctttctgtgtgagggatgtagtgggcc 472
Query: 273 aggaagctccatttgcgatgagaggctgagtgcttctgatgcaggtggtctgaagccaca 332
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 aggaagctccatttgggatgagaggctgagtgcttctgatgcaggtggtctgaagccaca 532
Query: 333 ctttgagaagctgccagagagaacaattgctgaagggagcaagggcaggtggaagccaat 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ctttgagaagctgccagagagaacaattgctgaagggagcaagggcaggtggaagccaat 592
Query: 393 gtgtaaaacaaacaattatctgtaatttaacacttagctagttctggctttgcagtgcag 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 gtgtaaaacaaacaattatctgtaatttaacacttagctagttctggctttgcagtgcag 652
Query: 453 aaagccggtccaagaacagaagtagttagctgctgacaatagaaacctcatgattgaaaa 512
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 aaagctggtccaagaacagaagtagttagctgctgacaatagaaacctcatgattgaaaa 712
Query: 513 agtgcaccgaagagggattatgctggaccacagttctgcacaacttgagaanaacataag 572
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 713 agtgcaccgaagagggattatgctggaccacagttctgcacaacttgagaaaaacataag 772
Query: 573 acaaatca 580
||||||||
Sbjct: 773 acaaatca 780
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space: 554441
Effective search space used: 554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
