BAC Information

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BAC

Clone NameMSMg01-346A01
Chromosome2 (Build37)
Map Location 119,804,764 - 120,023,141
singlet/doubletdoublet
Overlap geneMapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e
Upstream geneLOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga
Downstream geneLOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2, Ubr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346A01.T7 (MSMg01no346_a01.b1)MSMg01-346A01.TJ (MSMg01no346_a01.g1)
ACCAG458692AG458693
length718724
length of high quality
(start - end)
268 (38 - 305)544 (68 - 611)
definitionCHROMAT_FILE: MSMg01no346_a01.b1 PHD_FILE: MSMg01no346_a01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:34 2005CHROMAT_FILE: MSMg01no346_a01.g1 PHD_FILE: MSMg01no346_a01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,804,764 - 119,805,027)(120,022,598 - 120,023,141)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCT
CCCTTGCCAGACATCAACTGTATCTACTCCTTCCTTATAAAGTTCCAGTG
ACAAAGCAAAGTCACATTTCACCAGAGTTGACCCTGGGGAGCTTATTGTG
CTTGCTACAGAGCATGGGGAGGGGGTGGCAGGAGTTTGGGGGACCCTAGA
GCGGCCATACTGGAAAGTTGTCACAGGATATGCATCCTTCTTCAGCTTGT
ATGCTTCAGCTCCTCTCCAGACACTCTGATAGCGTAGTGCACATGCAGTC
AGGGCAGTCACATATTAGTGGCTGGGAGGCAGAGGGAGGGGAGCAGCCGG
AATCTCGGGGAAGGTGCAGTGATTAACCCTCTACCCTTCTCGGAGAGGAC
ATCAGCAGACAGCTTGGTGGTGGTCTCTTGAAATCATGGCTGATGGGATG
AAGACGGCAGCTGTTCTGCTTGGCTCCGCCTTCTTTATTTTTCTCAACAG
GAGAACTTCTTCTGCAGGCCAGGTTTGCCATGTTAGTTCTCCCGCCTCAG
CCCTGCCTCTCATGTCGGGATCTGATGTTTGTGCCTCTTCCATCTTTAAT
TCCTGTTATCTCTATTTCCACTTTCCTCTGTTGGGTCCTGTTCTCTGGCT
TGATTCCCCTTGCCTTGCCATCCTTCCCTCGTTTTTTGCTCCCTTTCCCC
TTCCTCCTTTTTCTTTTG
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTTTCTGTGATGAAAACGAGTTAAAACCCCCAA
CTGGTACCTCTAGGGGCATCTCATAGGATCCTCAAGAGATATTGGGGTAT
CCACTGTAACCTCACAAGAATATTCTGAACATCTATGAAGACAATTAACT
CACCTCTGCCACCTACAATTCAGGAAAGGGGACATGTCATTCATATGACC
AAACCCTCTGTCACTTCCTGGAAACAGGGACTAGAACCTGCTTTTGCCTA
GGAAATCCCAGTTCTTGAAATTCCCAGTTTAGTCACCACTTCCTGTGACC
AACGTGCAGGTATTCCTAGAGTTAGCTAATGTGCTTGTGTCAGATTGTCA
TCTGGGTCCCCAGAACTTCCACCACCTCTCTCCTTTGTGCTATCCCCTCT
TATTCCCAACCTTCAATGTATTGGGTGGAGGAAGATTTCTACAAACTAAC
TGGACAACTGATGAGTGAGTGTGGGTAGCTGATCGCCTGCTCGGTCTGGT
CTCTCCCAGGGATGGTTTGTTGTTGCTGTTTGCTTCCGCGTTTGTTGGTT
AGACAATCCTTACTGAGACTGGTCTTGAACTCATGTTCCTCCCATAACTA
CCCTCCAAGTTCATACAGCATGCTGTAATTTGTTTTGTTTTGTTTTCTGA
CCGCTGTGATCAATTTTGACCGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_a01.b1 MSMg01no346_a01.b1 CHROMAT_FILE:
MSMg01no346_a01.b1 PHD_FILE: MSMg01no346_a01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:34 2005
         (268 letters)



>mm_chr2_119804560_119805227
          Length = 668

 Score =  487 bits (252), Expect = e-142
 Identities = 261/264 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccctcccttgccagacatcaactgtatctactccttccttataaagttccagtga 64
           ||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccctccctagggagacatcaactgtatctactccttccttataaagttccagtga 264

                                                                       
Query: 65  caaagcaaagtcacatttcaccagagttgaccctggggagcttattgtgcttgctacaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caaagcaaagtcacatttcaccagagttgaccctggggagcttattgtgcttgctacaga 324

                                                                       
Query: 125 gcatggggagggggtggcaggagtttgggggaccctagagcggccatactggaaagttgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcatggggagggggtggcaggagtttgggggaccctagagcggccatactggaaagttgt 384

                                                                       
Query: 185 cacaggatatgcatccttcttcagcttgtatgcttcagctcctctccagacactctgata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cacaggatatgcatccttcttcagcttgtatgcttcagctcctctccagacactctgata 444

                                   
Query: 245 gcgtagtgcacatgcagtcagggc 268
           ||||||||||||||||||||||||
Sbjct: 445 gcgtagtgcacatgcagtcagggc 468


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space:   170681
Effective search space used:   170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no346_a01.g1 MSMg01no346_a01.g1 CHROMAT_FILE:
MSMg01no346_a01.g1 PHD_FILE: MSMg01no346_a01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:34 2005
         (544 letters)



>mm_chr2_120022398_120023341
          Length = 944

 Score = 1052 bits (544), Expect = 0.0
 Identities = 544/544 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttctgtgatgaaaacgagttaaaacccccaactggtacctctaggggcatctcatagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ctttctgtgatgaaaacgagttaaaacccccaactggtacctctaggggcatctcatagg 685

                                                                       
Query: 61  atcctcaagagatattggggtatccactgtaacctcacaagaatattctgaacatctatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 atcctcaagagatattggggtatccactgtaacctcacaagaatattctgaacatctatg 625

                                                                       
Query: 121 aagacaattaactcacctctgccacctacaattcaggaaaggggacatgtcattcatatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aagacaattaactcacctctgccacctacaattcaggaaaggggacatgtcattcatatg 565

                                                                       
Query: 181 accaaaccctctgtcacttcctggaaacagggactagaacctgcttttgcctaggaaatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 accaaaccctctgtcacttcctggaaacagggactagaacctgcttttgcctaggaaatc 505

                                                                       
Query: 241 ccagttcttgaaattcccagtttagtcaccacttcctgtgaccaacgtgcaggtattcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ccagttcttgaaattcccagtttagtcaccacttcctgtgaccaacgtgcaggtattcct 445

                                                                       
Query: 301 agagttagctaatgtgcttgtgtcagattgtcatctgggtccccagaacttccaccacct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agagttagctaatgtgcttgtgtcagattgtcatctgggtccccagaacttccaccacct 385

                                                                       
Query: 361 ctctcctttgtgctatcccctcttattcccaaccttcaatgtattgggtggaggaagatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctctcctttgtgctatcccctcttattcccaaccttcaatgtattgggtggaggaagatt 325

                                                                       
Query: 421 tctacaaactaactggacaactgatgagtgagtgtgggtagctgatcgcctgctcggtct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tctacaaactaactggacaactgatgagtgagtgtgggtagctgatcgcctgctcggtct 265

                                                                       
Query: 481 ggtctctcccagggatggtttgttgttgctgtttgcttccgcgtttgttggttagacaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggtctctcccagggatggtttgttgttgctgtttgcttccgcgtttgttggttagacaat 205

               
Query: 541 cctt 544
           ||||
Sbjct: 204 cctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space:   498756
Effective search space used:   498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)