BAC Information

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BAC

Clone NameMSMg01-346E02
Chromosome2 (Build37)
Map Location 161,410,155 - 161,410,645
singlet/doubletsinglet
Overlap genePtprt
Upstream geneLOC100043892, Top1, Plcg1, Zhx3, Lpin3, Emilin3, Chd6, LOC100043693, LOC100043694, LOC383769, LOC629655, LOC383770
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346E02.T7 (MSMg01no346_e02.b1)MSMg01-346E02.TJ (MSMg01no346_e02.g1)
ACCAG458885AG458886
length733738
length of high quality
(start - end)
111 (66 - 176)492 (67 - 558)
definitionCHROMAT_FILE: MSMg01no346_e02.b1 PHD_FILE: MSMg01no346_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:54 2005CHROMAT_FILE: MSMg01no346_e02.g1 PHD_FILE: MSMg01no346_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTA
GCACGCCCTGTGAGGATTGAATATTATTTTATTCATCTTTTAACTCCTGA
TAGTCATATTTGGAGGTCTTGTAATCTTCCAGGAGGGAGAAAGCATTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTATGTGTCAGTCCTGGGTAG
CAGCTAGCATACAAACTATCCTATATAGCAAGAGCTATCCTTGGCTATTT
GGTGATACCCAGGTCATTCTATCTCTACAACAGATGATTCTTGAAATCTG
TCCCCACACAGTTTTCTACCTATAGACTAATAAACTATATATAGAATAGG
CTACATCCAAGAAAAACTAATTTGATTTTAGAAGCCCATTCCTGACTGCT
GCGTCTCGCCCCGAATGTCCCCCGGTATTTCATTTCCTGCCGCGTTGGCT
TCTGTTGCCGTTCCCCCCCCTATGATTGCATCCTCCGTCTGTCACCTATC
GGTTTATCGCTCCCCTGTTCATCTCTCCCCCTCACCTTTCCCGTTTCCCT
TTATTACAACCCTCCCTCCTTTCCTACTCCCCCCACCCTCTCTTAACCTT
TTCTTAATCTCCGTCTTTTCATCTTCTCCGCTCCTCTCCTTTGTTCTTTT
ATCCCCCCCCTCCCCCTTTGTTTTTCTCTCTTTCCTCTTCCCTCCTTTTC
GCCCCCCTTCTCCTCTCCTTCTCTCCCGCCTCC
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTGTCTTATACCCACCCATAGAGAAAAAAAATAG
AGATGGAGAAAATTTAGAAGCCTTAGTAGTATCCTCTTGGTGATTTAAAA
TGAACCCTAATCTCTTTTCTAATTGAGGTTCAATAGCTGTAGCACATCAG
GTCTAGTATAGGTCTGTACTGAACCCAGCAGAGTCAGTCAAGGTAACCTG
TGGATCCAAAGAGCAACACAAGACATGAAGGGGAACCCCAGAGTGGGGAT
GAATGCATCCTGAGTTTTAATGGAACAAACAGGTTAAAGAAAAACAGCCC
AGGGGCCTGGAAATTGTCCCTGCCCTTATATCTGTCCCTCTCAAAGGCCA
TGCCTGCCCAACCTTGATAAACAGAAATATTCTTGGCACAAGAAGAAAAC
CGGCTGTGATTATCATCTTAAGGTACCCAGGTCCCCAAAAGGCCAGAGTA
GAGGTCCAAGGCCCAGGCCACAGGAGTACAGAAAAGATCAAAAGGAGAAA
GGAGGAGGGCAGGCGCTGTCATCAAACAATAGTGAAAGAGATACCTTGTT
AAAAAGCTCTTTCTTCCCAATGACCCTATTTAGAATGTAGTAATGGAGAT
TGGTCTTCCCAGGGAGTATAAATGGAAAGGAAGTAAACCGGGCGTAATGA
CTTGAAGTAAATGAGAACAATATAGCCCTTTGCTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_e02.g1 MSMg01no346_e02.g1 CHROMAT_FILE:
MSMg01no346_e02.g1 PHD_FILE: MSMg01no346_e02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:54 2005
         (492 letters)



>mm_chr2_161409955_161410845
          Length = 891

 Score =  835 bits (432), Expect = 0.0
 Identities = 477/492 (96%), Gaps = 1/492 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtcttatacccacccatagagaaaaaaaatagagatggagaaaatttagaagccttag 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 691 ttgtcttatacccacccatagag-aaaaaaatagagatggagaaaatttagaagccttag 633

                                                                       
Query: 61  tagtatcctcttggtgatttaaaatgaaccctaatctcttttctaattgaggttcaatag 120
           |||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 632 tagtatccccttggtgatttaaaatgaaacctaatctattttctaattgaggttcaatag 573

                                                                       
Query: 121 ctgtagcacatcaggtctagtataggtctgtactgaacccagcagagtcagtcaaggtaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 572 ctgtagcacatcaggtctagtataggtctgtactgaacccagcagagtcagtcaagataa 513

                                                                       
Query: 181 cctgtggatccaaagagcaacacaagacatgaaggggaaccccagagtggggatgaatgc 240
           |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 512 cctgtggatctaaagagcaacacaagacatgaaggggaaccccagggtggggatgaatgc 453

                                                                       
Query: 241 atcctgagttttaatggaacaaacaggttaaagaaaaacagcccaggggcctggaaattg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 atcctgagttttaatggaacaaacaggttaaagaaaaacagcccaggggcctggaaattg 393

                                                                       
Query: 301 tccctgcccttatatctgtccctctcaaaggccatgcctgcccaaccttgataaacagaa 360
            ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 392 cccctgcccttatatctgtccctctcaaagaccatgcctgcccagccttgataaacagaa 333

                                                                       
Query: 361 atattcttggcacaagaagaaaaccggctgtgattatcatcttaaggtacccaggtcccc 420
           ||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||
Sbjct: 332 atattcttggcacaagaagaaaaccagctgtgattatcatcttaagatacctaggtcccc 273

                                                                       
Query: 421 aaaaggccagagtagaggtccaaggcccaggccacaggagtacagaaaagatcaaaagga 480
           ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 272 aaaaggccagagtggaggtccaaggcccaggccacaggagcacagaaaagatcaaaagga 213

                       
Query: 481 gaaaggaggagg 492
           ||||||||||||
Sbjct: 212 gaaaggaggagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 891
Length adjustment: 10
Effective length of query: 482
Effective length of database: 881
Effective search space:   424642
Effective search space used:   424642
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)