BAC Information

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BAC

Clone NameMSMg01-346F04
Chromosome2 (Build37)
Map Location 112,888,833 - 112,889,333
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3, Slc12a6, Tmem85, EG668839, 2410042D21Rik, 2900064A13Rik, Chrm5, Aven, Ryr3
Downstream gene4930563P21Rik, Fmn1, Grem1, LOC100043520, Scg5, Arhgap11a, LOC100043526, Gja9, A530058N18Rik, Actc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346F04.T7 (MSMg01no346_f04.b1)MSMg01-346F04.TJ (MSMg01no346_f04.g1)
ACCAG458937AG458938
length706730
length of high quality
(start - end)
505 (44 - 548)502 (71 - 572)
definitionCHROMAT_FILE: MSMg01no346_f04.b1 PHD_FILE: MSMg01no346_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:59 2005CHROMAT_FILE: MSMg01no346_f04.g1 PHD_FILE: MSMg01no346_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCATGAGGCCTCAAGAAAGAACAATAAAGGAATCAGTCTTTGTTTTA
AAGGAATATTCTTAAAAGATTTTTTTGTCTAGGGTCAAGAGTGGCCTGTG
AAGCCCCCTTCAAGGGAAAGAGGCCCAGTGACTGATCTTTCATTCACTGC
TTGCCTTTCACATCCAGAATTCGCTCTCATCCTTTCCTGCGACTCCATAC
CTCTTTCACAATACCTGCTGTCCCAGCTGACACTTATACCTTGATACTTT
TCACTGTGTGCCAGTTACTGGCAGAGCTGTTAACGATCACCTCAGCATCC
TTCCCCAGACTCTCATCCATTTAGAGTGGACTTGGGCCCAGGCATCCTTG
TATTTCTTCTAGTGGTCCAAGTGACTCTTGTGTTCATGTAGAGTTCAGCT
CAGTTCTTTTATAGAGGGCTCAGATTAGTTCTTTATCCTGGAGACTCATC
AAATGTGAAAATATCATGAAAAAACAGGGTAAAAATGAGTTGTACCTCTG
TCCCTTCCTTACCAAAGGAAACCAAAGTAAACCAAGGGTCTCCTACAGAT
GTAGCAATCTCTTTTCATCATTGTGGAAGGGAGCGAAGTTTCCTGAATTA
ACTTTACACCCACATTTTCTTGATTCCCCCTTTCCCCCTAACCTCTTTGC
CCTTAN
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATGACACCTGAAGCAAGGTAGGGGTGTGTG
GCAAAGTCCCATTTCTAGCTGAGGAACTACTGGTGATTGATCGAAAAGAG
AATGTATGTTTTCTTTAAGAATGTAACTCCTTGGGAGGCTGCCCATCTTC
TAGTAATGGCCTAGACTCCTGTGTGTACAGGCAAAAGTAAGTGGGTTCAG
TGAGTATAAAAACATAATACATACAACTAGGAAAGATAGTAGTGGGGGTA
CCTGAGAGGACATGGAGAGGAGGGAATGGAGTTAGATTTCATCAAACACA
TTATAGAAGTGTATGAAAAATTTAAACAATAAAATACTTTAACAAAAACA
TCTGTATTAAATGTGTTTTATTTTATTTAAATTAAATATCAAACTAATAA
CTATTAGTTAAAATTATTAAATATTAATAAAATAATGTATAATGATTTAA
AAATCTAAATAGTTTTCTTAAATGAGATCTTAAAAGGTTAAGTGCTCTCT
CTCTCTCTCTGTAACAATAATCTAGAGCCTGTGAGTGGCATTGGTCAAAA
GAAAGGGGAAGGGTGTTGTGTAAGTAACTGAGGACATGAACTCTGCCTAG
ATGGGTTTCCAGGACTGACCTCTCCAAGACTCCTGTTTTCTTCAAAAAGG
AACATCCCAATGGACCAAGCACCCGGGGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_f04.b1 MSMg01no346_f04.b1 CHROMAT_FILE:
MSMg01no346_f04.b1 PHD_FILE: MSMg01no346_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:59 2005
         (505 letters)



>mm_chr2_112888629_112889533
          Length = 905

 Score =  969 bits (501), Expect = 0.0
 Identities = 501/501 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcatgaggcctcaagaaagaacaataaaggaatcagtctttgttttaaaggaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 gaattctcatgaggcctcaagaaagaacaataaaggaatcagtctttgttttaaaggaat 646

                                                                       
Query: 65  attcttaaaagatttttttgtctagggtcaagagtggcctgtgaagcccccttcaaggga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 attcttaaaagatttttttgtctagggtcaagagtggcctgtgaagcccccttcaaggga 586

                                                                       
Query: 125 aagaggcccagtgactgatctttcattcactgcttgcctttcacatccagaattcgctct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 aagaggcccagtgactgatctttcattcactgcttgcctttcacatccagaattcgctct 526

                                                                       
Query: 185 catcctttcctgcgactccatacctctttcacaatacctgctgtcccagctgacacttat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 catcctttcctgcgactccatacctctttcacaatacctgctgtcccagctgacacttat 466

                                                                       
Query: 245 accttgatacttttcactgtgtgccagttactggcagagctgttaacgatcacctcagca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 accttgatacttttcactgtgtgccagttactggcagagctgttaacgatcacctcagca 406

                                                                       
Query: 305 tccttccccagactctcatccatttagagtggacttgggcccaggcatccttgtatttct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tccttccccagactctcatccatttagagtggacttgggcccaggcatccttgtatttct 346

                                                                       
Query: 365 tctagtggtccaagtgactcttgtgttcatgtagagttcagctcagttcttttatagagg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tctagtggtccaagtgactcttgtgttcatgtagagttcagctcagttcttttatagagg 286

                                                                       
Query: 425 gctcagattagttctttatcctggagactcatcaaatgtgaaaatatcatgaaaaaacag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 gctcagattagttctttatcctggagactcatcaaatgtgaaaatatcatgaaaaaacag 226

                                
Query: 485 ggtaaaaatgagttgtacctc 505
           |||||||||||||||||||||
Sbjct: 225 ggtaaaaatgagttgtacctc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)