BAC Information

Click to search

BAC

Clone NameMSMg01-346K24
Chromosome2 (Build37)
Map Location 180,759,392 - 180,759,830
singlet/doubletsinglet
Overlap geneChrna4
Upstream geneLsm14b, Psma7, Ss18l1, Gtpbp5, Hrh3, Osbpl2, LOC100039470, Adrm1, Lama5, Rps21, Cables2, BC066135, Gata5, EG622283, Slco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1
Downstream geneKcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3, Rtel1, Arfrp1, Zgpat, Lime1, Btbd4, BC050777, Tpd52l2, Dnajc5, Uckl1, Znf512b, Samd10, Prpf6, LOC100039697, Sox18, Tcea2, Rgs19, 4930526D03Rik, Oprl1, LOC665538, Myt1, Pcmtd2, Polr3k, EG432881, LOC672125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346K24.T7 (MSMg01no346_k24.b1)MSMg01-346K24.TJ (MSMg01no346_k24.g1)
ACCAG459214AG459215
length764813
length of high quality
(start - end)		439 (58 - 496)365 (66 - 430)
definitionCHROMAT_FILE: MSMg01no346_k24.b1 PHD_FILE: MSMg01no346_k24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:26 2005CHROMAT_FILE: MSMg01no346_k24.g1 PHD_FILE: MSMg01no346_k24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGAC
CTTCACATGCAGCCTTAGATATGGGTTCTATAGATGCCCAGTTCACCTCA
TATCTTACCTCCCTCTGTTCTACCTAGCAGCAGCCTCTCTGACCCTGCAG
ATTCTCTGGCCATGCTCTGTCTCACCACATCAGTGTACAGATGTGTATCT
GATGGGAAATACAGAAACTGTGGCTCATAGTGCCAGGTTCCAGAAGATTC
TATGGTTGCCCATGGTATCTGAGAGCTAAAATGACCCATGTCTGTGTTTG
CAGGTGAAGGAGGACTGGAAATACGTGGCCATGGTCATTGACCGAATATT
CCTCTGGATGTTCATCATTGTCTGCCTTCTGGGCACTGTGGGACTCTTCC
TGCCTCCATGGTTGGCTGGTATGATCTAGGGAATAGCAGCACCTAGCTCC
CAGGTCTCTACAGGGCCATGCGACTCGTCAGTCACCCACATCTTCCAAAC
CGGCCATGAGACACCTANGAGAGAGAGATGCTTGCCTGGTTGACCCTGGT
TCTAGACAGGCCACCATCCTGGTTGGAGTTGTTTAAGACTGAAATAGTAT
CGGTTGAACCCCCATTAAGTTTCTTCCCAAAAAGTGGAAGTCCCTCCTTG
TTTTAAAAAACGAACACCCCCTTGTTCTAAAAAAAGAACACCGGCGGCTC
TCTTTTCTTTTTATGTAAAAAAAATTTTCCCCTTTTGAAACAAAAACCCC
CCGGTGGGGGATCC

GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXACTCCTCACAGTCATGGAGCCTGGGAAGTCCTGGC
TGGGGGGGGGGGGTGAGCAGACTTGGTGAACTCTAAATCACATAGCAGGA
ACGGTGGAACTGCCTCTGTGTAAAAGCCAGGGTTGCACAGCCACAAAAGC
ATCTCCTGCAGGAGGACCTAATTGAGAACTGCCTGAGAGACCAAGGATTG
CTGGTACAAACAATGCCAGCCAATCAGGAACTGCTGTTTAGAAGAGATGC
TTTCGTAGGACCAATGGGTCGAGGATGGAGGGTATTAAAGGCGCTTGCAG
CAGTGCTCAGAGGAGCTTGCTGTGGCATTTCTCACCTGCTCCTGGAGTCT
GTGTCATTGACTCTGTACTACCTTACCTCCAACCCCCAAGGGCACTTAGA
GTCAGGTGGCGAGTAGTTCATGGCACAGGTAAAACTAAAGAATTCTGCCC
CCTGCAATATTATTCTCCTACTGAGTCTTCTAATACCCGTATATACCAAA
GGTTGTTTTCCTGGTCTCTTCTTTTTTAACCCAATTTTTTTATTCCCTCC
CTTCTTCCCCCTTCTTTCTTTTCCCCTATGTTTCTTCCCGCGCACTTCCT
CTCCTTCCCTTATTTTTCTTTTCCCCCCCTTCCCCTTTTTACTTTTTTTT
CTATCCTCCCTCCCATCCTTTCATCTTACTCACTTCACCTTTTCTACATC
CCCCATCCATTTTTTTCCTTTTCCTATACCCCCCGCCATTTTTCCTCTTA
TTCTCTATCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_k24.b1 MSMg01no346_k24.b1 CHROMAT_FILE:
MSMg01no346_k24.b1 PHD_FILE: MSMg01no346_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:26 2005
         (439 letters)



>mm_chr2_180759192_180760030
          Length = 839

 Score =  810 bits (419), Expect = 0.0
 Identities = 434/439 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcagccttagatatgggttctatagatgcccagttcacctcatatcttacctccctctg 60
           ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 639 tgcagccttagatatgggttctatagatgcccagtccacctcatatgttacctccctctg 580

                                                                       
Query: 61  ttctacctagcagcagcctctctgaccctgcagattctctggccatgctctgtctcacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 ttctacctagcagcagcctctctgaccctgcagattctctggccatgctctgtctcacca 520

                                                                       
Query: 121 catcagtgtacagatgtgtatctgatgggaaatacagaaactgtggctcatagtgccagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 catcagtgtacagatgtgtatctgatgggaaatacagaaactgtggctcatagtgccagg 460

                                                                       
Query: 181 ttccagaagattctatggttgcccatggtatctgagagctaaaatgacccatgtctgtgt 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 459 ttccagaagattctatggttgcccatggtatctgagagctagaatgacccatgtctgtgt 400

                                                                       
Query: 241 ttgcaggtgaaggaggactggaaatacgtggccatggtcattgaccgaatattcctctgg 300
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 399 ttgcaggtgaaggaggactggaaatacgtggccatggtcattgaccgaatcttcctctgg 340

                                                                       
Query: 301 atgttcatcattgtctgccttctgggcactgtgggactcttcctgcctccatggttggct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 atgttcatcattgtctgccttctgggcactgtgggactcttcctgcctccatggttggct 280

                                                                       
Query: 361 ggtatgatctagggaatagcagcacctagctcccaggtctctacagggccatgcgactcg 420
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ggtatgatctagggaatagcggcacctagctcccaggtctctacagggccatgcgactcg 220

                              
Query: 421 tcagtcacccacatcttcc 439
           |||||||||||||||||||
Sbjct: 219 tcagtcacccacatcttcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |