XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTA
TTCTGCCAGCAAGAATAAAGAATTACCTTTAAAACTAATGGATTAAATAC
CTCCTCTTTCTAGCTGCTTGGTGGCTATACACGATGGCATGTTGTTGACA
TAGATCGGAAACCATGAAAGAGCTCATGGCTCTGTCAAAGTCCTGTATGT
TCGGATTGTTCGACTGCCACCCCTCAGTAATGAACCGGGTGATACCCTCT
GATGTGGTTCCCTAGAAATGACTTGGGCTCCCGAGCCGCCTTCATTTGTG
CTGAGGGAGAAGAAGCATGCAAGCCAGACTCACATTTCTGTCTATATGAC
ATGAGCAGTCATTAAACAGGTGTATTTCACAACCCCACAGGAAGTGGGAA
GCTGTGTGTAGGAAGGGTGGTAAACTGTGTCCGACGTGAAAGTGAAATAT
TACTTAGCTCACACTGCTTGCATCTAAACCACCCTACCTACTTGGTCAAA
CCAGGATATAAAAAAAATGACTATTAATCGTCTGTATATACTAATTAATG
CTAGAGATTAATATGGTAGCAGTTATTCCTTTACCAGCTAGTTTCTCAAA
TAACCACACTGAGACCCTTACTTAATATTTCAAAACTTACGCTTTATCTG
GGCAGACTCTCAACTAACTCATCTTAGTTAACTTGGCTACCTAGCTTCCT
TCATTCCCCCGATTAACCCCTACTTCTAAGCCCCTAAT

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATTTTTAATGGGGT
TATTTGAATTTCTGGAGTTCAGCTTCTTGAGCTCTTTGTATATATTGGAT
ATTAGTCCCCTATCAGATTTAAGATTGGTAAAAATCCTTTCCAAATCTGT
TGGTGGACTTTTTGTCTTATTGACATTATCTTTTGCCTTACAAAAGCTTT
GCAATTTTATGAGGTCCCATTTGTCGATTCTTGATCTTACAGCTCAGGCC
ATTGCTGTTCTGTTCAGGAATTTTCCCCCTATGCTATATCTTCGAGGCTT
TTCCAAACTTTCTCCTCTATAAATTTCAGTGTCTCTGGTTTTATGTGGAG
GTGTTTGATCCACTTAGGCTTGAGCTTTGTACAAGGAGATAAGAATGGAA
CAATTTGCATTCTTCTACATGATAACTGCCAGTTGAGCCAGCACCATTTG
TTGAAAATACTGTCTTTTTCCTACTGGATGGTTTTAGCTTTCTTGTCCAA
GATCAAGTGACTGACCATAAGTGTGTGGATTCATTTCTGGGGCCTCAATT
CTATTCCATTGATCCACCTGTCTGTTCTTTGAACCAGAACCATGCCTCCT
TTTATTCCCAATTTGTTTCGCAATACAGTTTTGTGCGCCAGGTTTGGTTC
ATCTCCCCCTTAAACTCCCTTTTTTGGCTTAAAAATTTTTCCTCCTCACC
CC

Query= MSMg01no346_l16.b1 MSMg01no346_l16.b1 CHROMAT_FILE:
MSMg01no346_l16.b1 PHD_FILE: MSMg01no346_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:29 2005
         (551 letters)



>mm_chr2_52947418_52948368
          Length = 951

 Score =  996 bits (515), Expect = 0.0
 Identities = 539/547 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttattctgccagcaagaataaagaattacctttaaaactaatggattaaatac 64
           |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 205 gaattcttcattctgccagcaagaataaagaattacctttaaaactaatagattaaatac 264

                                                                       
Query: 65  ctcctctttctagctgcttggtggctatacacgatggcatgttgttgacatagatcggaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctcctctttctagctgcttggtggctatacacgatggcatgttgttgacatagatcggaa 324

                                                                       
Query: 125 accatgaaagagctcatggctctgtcaaagtcctgtatgttcggattgttcgactgccac 184
           ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 325 accatgaaagagctcatggctctgtcaaagtcctgtatgtttggattgtttgactgccac 384

                                                                       
Query: 185 ccctcagtaatgaaccgggtgataccctctgatgtggttccctagaaatgacttgggctc 244
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccctcagtaatgaactgggtgataccctctgatgtggttccctagaaatgacttgggctc 444

                                                                       
Query: 245 ccgagccgccttcatttgtgctgagggagaagaagcatgcaagccagactcacatttctg 304
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagagccgccttcatttgtgctgagggagaagaagcatgcaagccagactcacatttctg 504

                                                                       
Query: 305 tctatatgacatgagcagtcattaaacaggtgtatttcacaaccccacaggaagtgggaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tctatatgacatgagcagtcattaaacaggtgtatttcacaaccccacaggaagtgggaa 564

                                                                       
Query: 365 gctgtgtgtaggaagggtggtaaactgtgtccgacgtgaaagtgaaatattacttagctc 424
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 565 gctgtgtgtaggaagggtggtaaactgtgtctgacgtgaaagtgaaatattacttagctc 624

                                                                       
Query: 425 acactgcttgcatctaaaccaccctacctacttggtcaaaccaggatataaaaaaaatga 484
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 625 acactgcttgcatctaaaccaccctacctacttggtcaaaccaggatgtaaaaaaaatga 684

                                                                       
Query: 485 ctattaatcgtctgtatatactaattaatgctagagattaatatggtagcagttattcct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctattaatcgtctgtatatactaattaatgctagagattaatatggtagcagttattcct 744

                  
Query: 545 ttaccag 551
           |||||||
Sbjct: 745 ttaccag 751


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space:   509081
Effective search space used:   509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)