BAC Information

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BAC

Clone NameMSMg01-347D18
Chromosome2 (Build37)
Map Location 37,651,790 - 37,830,563
singlet/doubletdoublet
Overlap geneDennd1a
Upstream geneRpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362, Olfr364-ps1, Olfr365, Olfr366, Olfr367, Olfr368, Pdcl, Rc3h2, Zbtb6, Zbtb26, Rabgap1, Gpr21, 6430510M02Rik, Strbp, LOC639491
Downstream geneLOC100040947, Lhx2, Nek6, Psmb7, LOC674251, Nr5a1, Nr6a1, Olfml2a, LOC624652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347D18.T7 (MSMg01no347_d18.b1)MSMg01-347D18.TJ (MSMg01no347_d18.g1)
ACCAG459626AG459627
length805769
length of high quality
(start - end)		376 (44 - 419)495 (80 - 574)
definitionCHROMAT_FILE: MSMg01no347_d18.b1 PHD_FILE: MSMg01no347_d18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:09 2005CHROMAT_FILE: MSMg01no347_d18.g1 PHD_FILE: MSMg01no347_d18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,830,191 - 37,830,563)(37,651,790 - 37,652,284)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACTCTGTATACCAGGTTGGCCTCGAACTCAGAAATCCGCCTGCCTCT
GCCTCCCGAGTGCTGGGATTAAAGGCATGCACCACCACGCCCGGCTTCAG
GTTCTTGTTTAAAATAGGAATCAGATTAACAGGGGACAGGTATGAGTCAT
TTCATAATCTGTCCCCTAAGTGCAAAATGCTTTTAATCCTGGCTTCTTTG
CAGATACCTCTTAGAAACAAATAATAGGTGAGTTAGATCTACTAATGTGC
ACAATGCTTCAGCTTCCTGGTCACTGCTTTAAAAGGGCTTCTGGCTGTGT
TAAGATGGCCCTTTAAAGCTTACCCTTGTATAAGTACATTCCTCACGTCA
CAGAAATTTTTAATGAGAAGCAAGTGAAGAAATGTGTGTACACCATATCC
ATCACATGATAGGTGTAAAATAAATGGAAGTGACTTACTAGCATTTTGTA
TCTGTGTAATGGACTACTTTTTTTTATGATAGACCTTCCCTTTACTGTCT
TCTTCCTCTTGTCCCTTATTATTCCTTTTCCCATATTCCCCGTGTTTTTT
CGCTTCTTTCCCCTCCTCCCATTCGCTTTTTTCTCTTTCTTTTTTCCCTT
ACCTTTTCCCTCCCCTTTCCTCTTTCCTCTTCTTTTCTTTTCCTTTCCCC
CCTCTTCCCTTCTTTCAACCTTCCTCCCCACTTCCTCTTTTACTCATCCC
TTTATTCCACCTTTCACTTTCTCCTATTACCATCTTTTTTTTACCCTTTC
TTTTG

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGACTCCCCCCCACCCCCC
AGGCACTCCTGGAATGTCTACTGTCTATCCTCCTAGCCAGGCTATGCAAC
ACTCCCAGGCTAACATTGGCTTCTTTGCTTGGACATCCCAGGGGCCGTCT
CTCTCTCTGTAACTCTGGGACACTTTTCTAAGTTTTCTTGTCTTCCATCT
ATTGCAGAAAACCCTACCTCTGCCTCTGCCGTTCCCACTGCTGGAGGTAG
CAGTGCCTGCAGCCTGTGCCTGCCTCCTCCTTCTCCTCCTGGGCCTCCTC
TCAGGAATCCTGGCTGCCAGAAAGCGCCGCCAGTCTGAGGGCACTTACAG
CCCAAGTCAGCAGGAGGTGGCTGGGGCTCGTCTGGAGATGGACAGTGTCC
TCAAGGTGCCACCAGAGGAGAGACTTATTTAGGTTTGCCTGGATGCTGGT
GCCATGTCCTGAAGGTCCTAAAGGGTCACCACAGGACTTCTACCTGGAGA
CCCAAAGAGACTGTTTCCAGAGCTGGGACATCCACAGGATGTGCCCCCAT
GGTTGGCAGTCCTTGCTCTGTCCATCATGGACTCTGGAAATGGTGAAAAA
ACTCACGGAATCTAAGAAGGCTGTGAAAATTGGGAAATTCTCCGACCCGG
TGGGTTCGGATACAGGCCAATCGTGGGTTGCCCTGCCATAAACAGGGCCC
GTCCTTTTTCTCTCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_d18.b1 MSMg01no347_d18.b1 CHROMAT_FILE:
MSMg01no347_d18.b1 PHD_FILE: MSMg01no347_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:09 2005
         (376 letters)



>mm_chr2_37829888_37830663
          Length = 776

 Score =  706 bits (365), Expect = 0.0
 Identities = 371/373 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactctgtataccaggttggcctcgaactcagaaatccgcctgcctctgcctcc 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ggaattcactctgtagaccaggttggcctcgaactcagaaatccgcctgcctctgcctcc 617

                                                                       
Query: 64  cgagtgctgggattaaaggcatgcaccaccacgcccggcttcaggttcttgtttaaaata 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 616 cgagtgctgggattaaaggcatgcaccaccacgcccggcttcaggttcttgattaaaata 557

                                                                       
Query: 124 ggaatcagattaacaggggacaggtatgagtcatttcataatctgtcccctaagtgcaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ggaatcagattaacaggggacaggtatgagtcatttcataatctgtcccctaagtgcaaa 497

                                                                       
Query: 184 atgcttttaatcctggcttctttgcagatacctcttagaaacaaataataggtgagttag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 atgcttttaatcctggcttctttgcagatacctcttagaaacaaataataggtgagttag 437

                                                                       
Query: 244 atctactaatgtgcacaatgcttcagcttcctggtcactgctttaaaagggcttctggct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 atctactaatgtgcacaatgcttcagcttcctggtcactgctttaaaagggcttctggct 377

                                                                       
Query: 304 gtgttaagatggccctttaaagcttacccttgtataagtacattcctcacgtcacagaaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gtgttaagatggccctttaaagcttacccttgtataagtacattcctcacgtcacagaaa 317

                        
Query: 364 tttttaatgagaa 376
           |||||||||||||
Sbjct: 316 tttttaatgagaa 304


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space:   281489
Effective search space used:   281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no347_d18.g1 MSMg01no347_d18.g1 CHROMAT_FILE:
MSMg01no347_d18.g1 PHD_FILE: MSMg01no347_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:09 2005
         (495 letters)



>mm_chr2_37651590_37652484
          Length = 895

 Score =  934 bits (483), Expect = 0.0
 Identities = 492/495 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgactcccccccaccccccaggcactcctggaatgtctactgtctatcctcctagcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgactcccccccaccccccaggcactcctggaatgtctactgtctatcctcctagcca 260

                                                                       
Query: 61  ggctatgcaacactcccaggctaacattggcttctttgcttggacatcccaggggccgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggctatgcaacactcccaggctaacattggcttctttgcttggacatcccaggggccgtc 320

                                                                       
Query: 121 tctctctctgtaactctgggacacttttctaagttttcttgtcttccatctattgcagaa 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctctctctctaactctgggacacttttctaagttttcttgtcttccatctattgcagaa 380

                                                                       
Query: 181 aaccctacctctgcctctgccgttcccactgctggaggtagcagtgcctgcagcctgtgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaccctacctctgcctctgccgttcccactgctggaggtagcagtgcctgcagcctgtgc 440

                                                                       
Query: 241 ctgcctcctccttctcctcctgggcctcctctcaggaatcctggctgccagaaagcgccg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgcctcctccttctcctcctgggcctcctctcaggaatcctggctgccagaaagcgccg 500

                                                                       
Query: 301 ccagtctgagggcacttacagcccaagtcagcaggaggtggctggggctcgtctggagat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccagtctgagggcacttacagcccaagtcagcaggaggtggctggggctcgtctggagat 560

                                                                       
Query: 361 ggacagtgtcctcaaggtgccaccagaggagagacttatttaggtttgcctggatgctgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 561 ggacagtgtcctcaaggtgccaccagaggagagacttatttaggtttgcctggctgctgg 620

                                                                       
Query: 421 tgccatgtcctgaaggtcctaaagggtcaccacaggacttctacctggagacccaaagag 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 621 tgccatgtcctgaaggtcctaaagggtcaccacaggacttctacctggagacccaaggag 680

                          
Query: 481 actgtttccagagct 495
           |||||||||||||||
Sbjct: 681 actgtttccagagct 695


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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