Query= MSMg01no348_b16.b1 MSMg01no348_b16.b1 CHROMAT_FILE:
MSMg01no348_b16.b1 PHD_FILE: MSMg01no348_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:17 2005
(584 letters)
>mm_chr2_35887662_35888645
Length = 984
Score = 1094 bits (566), Expect = 0.0
Identities = 579/586 (98%), Gaps = 5/586 (0%)
Strand = Plus / Minus
Query: 4 ggaattccattgtttgggttggaata-----ggtagctatgtgaccctaggcaaggaagg 58
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 882 ggaattccattgtttgggttggaatacactcggtagctatgtgaccctaggcaaggaagg 823
Query: 59 ttcttagcattactgtaccttagtttcttcacctgtgaataaggagggaggagcacagag 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 ttcttagcattactgtaccttagtttcttcacctgtgaataaggagggaggagcacagag 763
Query: 119 atggtacctactgtctggagtggccttaagtatttggtgaattacgcaccaaatgtagcc 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 atggtacctactgtctggagtggccttaagtatttggtgaattacgcaccaaatgtagcc 703
Query: 179 tgctgggttgacacatggcagtagtatcctaacatgtagcactaggtacgcaccagggat 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 tgctgggttgacacatggcagtagtatcctaacatgtagcactaggtacgcaccagggat 643
Query: 239 ctccccttgtcccaaactacaaggactaaataaatgtctgtcctgatgcccaccgcatga 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 ctccccttgtcccaaactacaaggactaaataaatgtctgtcctgatgcccaccgcatga 583
Query: 299 cagacatctaggaaatcaaactcactaccacattcatctttccaaagcccatctcccacc 358
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 582 cagacatctaggaaatcaaactcactaccacattcatctttccaaagcctatctcccacc 523
Query: 359 aaacaacaaattccttccatgtggaaatgtgcttaacttattcacattaaattgttttct 418
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 522 aaacaacaaattccttccatgtggaaacgtgcttaacttattcacattaaattgttttct 463
Query: 419 tatagatagcaaatcctgggtgaaatgctttgagtataatgaaggttgtattcttaggcc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tatagatagcaaatcctgggtgaaatgctttgagtataatgaaggttgtattcttaggcc 403
Query: 479 acgaaacaggctgtgaaaaactttaaaaagttgcttatatagctgagtctggtggctcat 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 acgaaacaggctgtgaaaaactttaaaaagttgcttatatagctgagtctggtggctcat 343
Query: 539 tcctataatcccagggttgggaaggctgaggcaggaggatcactgc 584
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tcctataatcccagggttgggaaggctgaggcaggaggatcactgc 297
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no348_b16.g1 MSMg01no348_b16.g1 CHROMAT_FILE:
MSMg01no348_b16.g1 PHD_FILE: MSMg01no348_b16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:17 2005
(490 letters)
>mm_chr2_35688180_35689069
Length = 890
Score = 901 bits (466), Expect = 0.0
Identities = 484/490 (98%)
Strand = Plus / Plus
Query: 1 cttctgtgtgtgtaatgtttgataaagactacattgaactgtgacccgccggtcgcccat 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttccgtgtgtgtaatgtttgataaagactacattgaactgtgacccgccggtcgcccat 260
Query: 61 tctgcactcatccggctcagcccagacaagcaagcaggagcaggggaagcttgccttcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgcactcatccggctcagcccagacaagcaagcaggagcaggggaagcttgccttcca 320
Query: 121 gggctcatgatgatttgtggcgggtgccgttccttctctcttgtttttcttgtgctttcc 180
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 gggctcgtgatgatttgtggcgggtggcgttccttctctcttgtttttcttgtgctttcc 380
Query: 181 acagtgtggggcccagcagtaagaatctgggaatcttgcctctgagttctgttttcttgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagtgtggggcccagcagtaagaatctgggaatcttgcctctgagttctgttttcttgg 440
Query: 241 accagtctgacaagtgatggaagtgcttagggaccagacccggctgaatgaatgacttct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accagtctgacaagtgatggaagtgcttagggaccagacccggctgaatgaatgacttct 500
Query: 301 gtaaaatgtccagatcctgcattggtgagaggaccaggaggtgaagccgaaccacacagt 360
|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 ataaactgtccagatcctgcattggtgagaggaccaggaggtgaagccaaaccacacagt 560
Query: 361 ctaccactgtctcctgcaccctcatctctgccacttatcagagaaaacatagagcagaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctaccactgtctcctgcaccctcatctctgccacttatcagagaaaacatagagcagaca 620
Query: 421 ctatctctttgaaggggtttgagtcctagaaaatatgagctaaattttaagtacaatttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctatctctttgaaggggtttgagtcctagaaaatatgagctaaattttaagtacaatttt 680
Query: 481 aattttaatg 490
||||||||||
Sbjct: 681 aattttaatg 690
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space: 422400
Effective search space used: 422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
