Query= MSMg01no348_i11.b1 MSMg01no348_i11.b1 CHROMAT_FILE:
MSMg01no348_i11.b1 PHD_FILE: MSMg01no348_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:51 2005
(562 letters)
>mm_chr2_157904390_157905350
Length = 961
Score = 774 bits (400), Expect = 0.0
Identities = 502/584 (85%), Gaps = 75/584 (12%)
Strand = Plus / Minus
Query: 37 gtgagggggttagagtatggggttttgactccctttactataaataatcacctacagtat 96
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 gtgagggggttagagtatggggttttgactccctttactataaataatcacctacagtat 902
Query: 97 acagccttccaacacatttcatctttaatttctcatcacatgtacatgcaaatacctgca 156
||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 901 acagccttccaac--------------atttctcatcacatgtacatgcaaatacctgca 856
Query: 157 tacattat---------------------------------------------------- 164
||||||||
Sbjct: 855 tacattattatatatatatatatatatatatatatatatatatatatatatatatatata 796
Query: 165 --------tatatacatacatatatatatatatgtagtcacagccattactgaggggagg 216
|||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 795 tatatacatatatacatatatatatatatatatatagtcacagccattactgaggggagg 736
Query: 217 ccgaatgtctcagagctggtaccagtcccacttgacagaccttgtgcttattatatactg 276
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 735 ccgaatgtctcagagctggtaccagtcccacttgacagaccttgtgcttattagatac-a 677
Query: 277 ttgttaactgcctcatctgtttgctgactaagacccacacggatagccagcatttaaatc 336
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 676 ttgttaactgcctcatctgtttgctgactaagacccacacggatagccagcatttaaacc 617
Query: 337 cgtggagggtgctatgcaggcacggagttcactaataagatccctacaaggcagaatctt 396
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 cgtggagggcgctatgcaggcacggagttcactaataagatccctacaaggcagaatctt 557
Query: 397 tgcaaaatccaggcattgaacttcagaccttgaaaggaccttagcagtttcttggccaac 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tgcaaaatccaggcattgaacttcagaccttgaaaggaccttagcagtttcttggccaac 497
Query: 457 ataatgaaaatcagtcaagtgcctaagtgactgctgggagaccagcccaaggtcaccgca 516
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 496 ataatgaaaatcagtcaagtgcctaagtgactgctgggagaccggcccaaggtcaccgca 437
Query: 517 ggagacaagacagcactttccaaagctgccctttatttatttgg 560
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ggagacaagacagcactttccaaagctgccctttatttatttgg 393
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 961
Length adjustment: 10
Effective length of query: 552
Effective length of database: 951
Effective search space: 524952
Effective search space used: 524952
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no348_i11.g1 MSMg01no348_i11.g1 CHROMAT_FILE:
MSMg01no348_i11.g1 PHD_FILE: MSMg01no348_i11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:51 2005
(248 letters)
>mm_chr2_157796530_157797183
Length = 654
Score = 435 bits (225), Expect = e-126
Identities = 242/251 (96%), Gaps = 6/251 (2%)
Strand = Plus / Plus
Query: 1 agcctgggcagtcaggaaaccctaagaggcctggcctgcctcttctgtgcacagaggagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcctgggcagtcaggaaaccctaagaggcctggcctgcctcttctgtgcacagaggagc 260
Query: 61 taggtattatgaaataacgtgcagagaggtattaaaaatacctgcaaagaggggtcgaca 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taggtattatgaaataacctgcagagaggtattaaaaatacctgcaaagaggggtcgaca 320
Query: 121 tgatggaacactcccccccccccacaca------acggtatcagcatgagctaacaacag 174
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 tgatggaacactcccccccccccacacacacacaacggtatcagcatgagctaacaacag 380
Query: 175 aactataaacccacagaaccttcaattaaaaaaaatattgtgtgtgtgtgtgtgtgtgtg 234
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 aactacaaacccacagaaccttcaattaaaaaaaatattgtgtgtgtgtgtgtgtgtggg 440
Query: 235 tgtgtgtgtgt 245
|||||||||||
Sbjct: 441 tgtgtgtgtgt 451
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 654
Length adjustment: 9
Effective length of query: 239
Effective length of database: 645
Effective search space: 154155
Effective search space used: 154155
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
