BAC Information

Click to search

BAC

Clone NameMSMg01-348O10
Chromosome2 (Build37)
Map Location 23,406,228 - 23,406,522
singlet/doubletsinglet
Overlap gene4921517N04Rik
Upstream geneMyo3a, Gad2, Apbb1ip, Pdss1, Abi1, 1200016E24Rik, Acbd5, Mastl, Yme1l1, 4931423N10Rik, LOC664835, Nxph2, LOC664822
Downstream geneLOC100039149, Sh3d2c-ps1, Hnmt, Tbpl2, Il1f8, LOC215253, Il1f9, Il1f6, LOC620156, Il1f5, Il1f10, Il1rn, Psd4, Pax8, LOC433410
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-348O10.T7 (MSMg01no348_o10.b1)MSMg01-348O10.TJ (MSMg01no348_o10.g1)
ACCAG460885AG460886
length723726
length of high quality
(start - end)
312 (36 - 347)457 (66 - 522)
definitionCHROMAT_FILE: MSMg01no348_o10.b1 PHD_FILE: MSMg01no348_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:21 2005CHROMAT_FILE: MSMg01no348_o10.g1 PHD_FILE: MSMg01no348_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTTT
CCCAGTATACTGGCACCCTCTTCTCAGAACATGGGCTGATAATATCTTGG
TTACTGATAAAGGAGGCCCTGATACATTTGCTAAAAGTCATATCACTTAT
AACTGAACTGAGTAAGTTCTTTCTTCATTATAGTCCACTAACTAAAGTGG
GTCTTCTTATTATTGCCAGATTTTTCGCTAAATTTAGAGTCACTCCTCGA
CTATTTTTTGCCATATCTGTGTATGCATTTATTACATCTGTAAAGTTTAG
AGATTCCTTGATAAATCTCTTCACTTTCATTTAACGTTATCAGCAATCTC
AAGCCAATATTTACTTTTGATAGGGAGAAGAAATGGAACGATAGGTGCAT
GGTTATTTGACATGACCTTTATTTTCTCCTAACTATTGGGAAATTTTTAT
AGTAAACATACGTAGTTATGTTAGTACCCATCTATATTCAAAGATTACTG
CTGATGCTTCTGTAAAATACGAAATGTCACAAATGTTCATATCAGTAAGA
TTCCCTTCTCATTATTACCTTTTGTATTAAACACCACCACTTGAACTTCC
TAACTTGAATCCCGACTCGTGCTTCACTTAACCCCGGTTTTAATTGATTT
CATTACCTTACGAAAGTTGCCTTTATTCCGTATATATCCCTTGTCCTTTT
CCCTTTTTACCCTTCGCCGTTTT
GTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTGGAGCTCTGTCCAGGAAGTTGAATCCTGTGCTT
TCAAGGGTATTCCCTACTTTCTCTTGTCTTAGGTTCAGTGTATCTGGTTT
TATATTGAGGTCTTTGATCCACATGAACCTGATGTTTGTGCAGGTTCATA
AGGATAAATTTATTTCCATTCTTCTATATGCTGACCTACAGTTAGATGAG
CACCATTTGCTGAAGATGCTTATTTATGTTCATTGTGTATTTCTGGGCTC
TTTATGAAAAATTAGATAGCTATAGCAGTGTGGACTGACATCTAGTTCTT
TGGTTTAGTTCCGTTGATCAACCTATCTGTATTACAGTCCATATCATGTA
CAATTTATTACTATAGCTCTGTAGAAGACCTTGAAATGGGGGATTCTGAT
ACCCATAAATATTCTTTTTTATTGGATATTTTATTTACTTACATTTCAAA
TGCTATCCCTTTCCCAGTTTCCCCTCTGAGATTCTCCTATACTATCTCCC
TTCCCCTGCTTCTATGGGGTGCTCCATCACCCATTCATCCACACCCACTT
CATTGTTCCTAGCTTTCCCTTACCCTGCGCCCTTCCCTCTTCCTATCACC
ACTGGTCTCTCCTCCTATTGAAGACAGCTAAGTCCATCCTCTGCTAACTA
TGCAGCTGGAGCCTTGGGTCTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no348_o10.b1 MSMg01no348_o10.b1 CHROMAT_FILE:
MSMg01no348_o10.b1 PHD_FILE: MSMg01no348_o10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:21 2005
         (312 letters)



>mm_chr2_23406011_23406722
          Length = 712

 Score =  532 bits (275), Expect = e-155
 Identities = 290/295 (98%)
 Strand = Plus / Minus

                                                                       
Query: 18  cagtatactggcaccctcttctcagaacatgggctgataatatcttggttactgataaag 77
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 cagtatactggcaccctcttctcagaacatgggctgataatatcttggttactgataaag 453

                                                                       
Query: 78  gaggccctgatacatttgctaaaagtcatatcacttataactgaactgagtaagttcttt 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gaggccctgatacatttgctaaaagtcatatcacttataactgaactgagtaagttcttt 393

                                                                       
Query: 138 cttcattatagtccactaactaaagtgggtcttcttattattgccagatttttcgctaaa 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 392 cttcattatagtccactaactaaagtgggtcttcttattattgccagatttttcgttaaa 333

                                                                       
Query: 198 tttagagtcactcctcgactattttttgccatatctgtgtatgcatttattacatctgta 257
           |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 332 tttagagtcactcctcgactattttttgtcatatctgtgtatgtatttattacatctgta 273

                                                                  
Query: 258 aagtttagagattccttgataaatctcttcactttcatttaacgttatcagcaat 312
           ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 272 aagtttagagattccttgataaatctcttcattttcatttaatgttatcagcaat 218


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)