BAC Information

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BAC

Clone NameMSMg01-348P23
Chromosome2 (Build37)
Map Location 59,915,053 - 60,074,355
singlet/doubletdoublet
Overlap geneBaz2b, LOC667103, LOC667106, Ldha-ps, LOC100039092, March7
Upstream genePkp4, LOC625354, 2310032F03Rik, LOC100038999, LOC100039016, Tanc1, Wdsub1
Downstream geneCd302, LOC625861, Ly75, LOC100039176, Pla2r1, Itgb6, Rbms1, ENSMUSG00000075325
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-348P23.T7 (MSMg01no348_p23.b1)MSMg01-348P23.TJ (MSMg01no348_p23.g1)
ACCAG460959AG460960
length737745
length of high quality
(start - end)		555 (37 - 591)537 (69 - 605)
definitionCHROMAT_FILE: MSMg01no348_p23.b1 PHD_FILE: MSMg01no348_p23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:29 2005CHROMAT_FILE: MSMg01no348_p23.g1 PHD_FILE: MSMg01no348_p23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,073,824 - 60,074,355)(59,915,053 - 59,915,589)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGCATCCGCGGAATTCTCTT
TTTTCCGCGAAGTTTTCTGTTAAAAGTCATATTTTGTTAGTTAACTGATG
GCACATCAAAGAGGCATACAATAAATGGACAGTATTGAACGAATACAGCC
TGGACAGTGTGAGTCAAGTTAGCAAGACATTTACAGAAAGGGACACACGG
ACTTATGTAAGGTGACTTTCTGCCTTAGCTTAATCAGAAACACGACATTG
AGCACAAACGACTCTGAAAAGCTAAACATTCTGTTTTGTATTTAACATGT
CTCCCTTCATGTTTCAACTCTATTTTACTAAGTAGATCCAATTTTTCTGT
GTTTATCAATCAGTGTAGTCTTAAAATCCTTATATAGGAGGTTAAAATAT
AATAAACACATAAAAACACATACTATAAACTCTGTCAAGATAAATGATCT
TTTAAAACTATATTATCTAGGACGCGGTGTGGTAGTATGTGTCTTTAATA
CATGTGGGAGACAGAAGCAGGTAGATCTCTATTGGCTCCAGGCCAATTAG
GGCTACATAATAATGAGACTATCTCANAAAGAAAAAAAGCAAAAACCAAC
CAAATAAAACCAAAACCCCCCTAACCAGGCAGAGTGGTACATCTCTGTAA
ACAGTCAAGATCAATAAAGCCATCTTTTGAAGGTAGAAACCTAAGCTACA
ATCTTCAGATCGCTTACCACCCCCGGAAACTGCTATC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCCTTGAATTAACCTAACATGAAGGAAACACA
AAACTGCCAAGACACAAACGGGAACAAAGCTCCTGCCGCCTTCAGTGTGG
CAGGGCGGGCTTCGTCCAGAGACAGCAACATTACTTAGAGAGTAGCCTAT
AGGGCATGCGGTCTACAGGCTTGGTCTATCTTCAGACAGTCATCAGGAAA
AGAATCGCTGGGTCTTAAATATATCACAAAGGACTGATTCTAAGCACTTC
CTCTATGATTAGTAGCCCATCGCACAGTCAAAATGTCATTTACTGAAAAC
AGGAGAAACTGCTACACACTAATCCTTATCAAAGATTAAAAGTATATCTC
CTGGACGAATCCAGTGTAAGCTGGGAACCCAGGGGAAACTGCACATTAAG
CCACTTCCTAAGCTGCTAATGACTTGCAGTCTATCCCTGAGAAATCTGAC
CTTCTAGAAACTTCTTCATTAACAGGGCTTTATTTAAGACATCTCTTAAA
TGCTTTAGTATTAAAAAACAACACACTGTCAGTGTTTTCAGGTTAATAGC
TTTCATGTGTTGCCTTAACAATCCTCATAATAATCCCTTCAAAAAAAAAG
CAGAAGATGAATAATCCTCATTTCACTCTCACGGAGAAGCTTGCAAAAAA
TATGAGAATTGGCCCCACGAAAGAGCTGGCATGGCTTCCGTGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no348_p23.b1 MSMg01no348_p23.b1 CHROMAT_FILE:
MSMg01no348_p23.b1 PHD_FILE: MSMg01no348_p23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:29 2005
         (555 letters)



>mm_chr2_60073717_60074671
          Length = 955

 Score = 1023 bits (529), Expect = 0.0
 Identities = 531/532 (99%)
 Strand = Plus / Minus

                                                                       
Query: 24  aagttttctgttaaaagtcatattttgttagttaactgatggcacatcaaagaggcatac 83
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 aagttttctgttaaaagtcatattttgttagttaactgatggcacatcaaagaggcatac 580

                                                                       
Query: 84  aataaatggacagtattgaacgaatacagcctggacagtgtgagtcaagttagcaagaca 143
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 aataaatggacagtattgaacgaatacagcctggacagtgtgagtcaagttagcaagaca 520

                                                                       
Query: 144 tttacagaaagggacacacggacttatgtaaggtgactttctgccttagcttaatcagaa 203
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 tttacagaaagggacacacggacttatgtaaggtgactttctgccttagcttaatcagaa 460

                                                                       
Query: 204 acacgacattgagcacaaacgactctgaaaagctaaacattctgttttgtatttaacatg 263
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 acacgacattgagcacaaacgactctgaaaagctaaacattctgttttgtatttaacatg 400

                                                                       
Query: 264 tctcccttcatgtttcaactctattttactaagtagatccaatttttctgtgtttatcaa 323
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tctcccttcatgtttcaactctattttactaagtagatccaatttttctgtgtttatcaa 340

                                                                       
Query: 324 tcagtgtagtcttaaaatccttatataggaggttaaaatataataaacacataaaaacac 383
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tcagtgtagtcttaaaatccttatataggaggttaaaatataataaacacataaaaacac 280

                                                                       
Query: 384 atactataaactctgtcaagataaatgatcttttaaaactatattatctaggacgcggtg 443
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 atactataaactctgtcaagataaatgatcttttaaaactatattatctaggacgcggtg 220

                                                                       
Query: 444 tggtagtatgtgtctttaatacatgtgggagacagaagcaggtagatctctattggctcc 503
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 tggtagtatgtgtctttaatacatgtgggagacagaagcaggtagatctctattggctcc 160

                                                               
Query: 504 aggccaattagggctacataataatgagactatctcanaaagaaaaaaagca 555
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 159 aggccaattagggctacataataatgagactatctcaaaaagaaaaaaagca 108


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no348_p23.g1 MSMg01no348_p23.g1 CHROMAT_FILE:
MSMg01no348_p23.g1 PHD_FILE: MSMg01no348_p23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:29 2005
         (537 letters)



>mm_chr2_59914853_59915789
          Length = 937

 Score = 1007 bits (521), Expect = 0.0
 Identities = 533/537 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccttgaattaacctaacatgaaggaaacacaaaactgccaagacacaaacgggaacaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccttgaattaacctaacatgaaggaaacacaaaactgccaagacacaaacgggaacaaa 260

                                                                       
Query: 61  gctcctgccgccttcagtgtggcagggcgggcttcgtccagagacagcaacattacttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctcctgccgccttcagtgtggcagggcgggcttcgtccagagacagcaacattacttag 320

                                                                       
Query: 121 agagtagcctatagggcatgcggtctacaggcttggtctatcttcagacagtcatcagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagtagcctatagggcatgcggtctacaggcttggtctatcttcagacagtcatcagga 380

                                                                       
Query: 181 aaagaatcgctgggtcttaaatatatcacaaaggactgattctaagcacttcctctatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagaatcgctgggtcttaaatatatcacaaaggactgattctaagcacttcctctatga 440

                                                                       
Query: 241 ttagtagcccatcgcacagtcaaaatgtcatttactgaaaacaggagaaactgctacaca 300
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttagtagcccatctcgcagtcaaaatgtcatttactgaaaacaggagaaactgctacaca 500

                                                                       
Query: 301 ctaatccttatcaaagattaaaagtatatctcctggacgaatccagtgtaagctgggaac 360
           |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 501 ctaatccttatcaaagattaaaagtatatctcttggacgaatccagtgtaagccgggaac 560

                                                                       
Query: 361 ccaggggaaactgcacattaagccacttcctaagctgctaatgacttgcagtctatccct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccaggggaaactgcacattaagccacttcctaagctgctaatgacttgcagtctatccct 620

                                                                       
Query: 421 gagaaatctgaccttctagaaacttcttcattaacagggctttatttaagacatctctta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagaaatctgaccttctagaaacttcttcattaacagggctttatttaagacatctctta 680

                                                                    
Query: 481 aatgctttagtattaaaaaacaacacactgtcagtgttttcaggttaatagctttca 537
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatgctttagtattaaaaaacaacacactgtcagtgttttcaggttaatagctttca 737


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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