BAC Information

Click to search

BAC

Clone NameMSMg01-350L01
Chromosome2 (Build37)
Map Location 81,708,572 - 81,708,941
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040624, LOC100040655, LOC100040704
Downstream geneZfp804a, LOC100041308, A130030D18Rik, EG624362, LOC433550, LOC269292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350L01.T7 (MSMg01no350_l01.b1)MSMg01-350L01.TJ (MSMg01no350_l01.g1)
ACCAG462242AG462243
length778755
length of high quality
(start - end)
375 (53 - 427)521 (84 - 604)
definitionCHROMAT_FILE: MSMg01no350_l01.b1 PHD_FILE: MSMg01no350_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:42 2005CHROMAT_FILE: MSMg01no350_l01.g1 PHD_FILE: MSMg01no350_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCCTTCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCACAGTATTTCCTTTGTCGCAAGGCTTGGGGACCTCTG
TACCAGCTTCATCTTTCCCACCCTCGGAAAAAGGAATATGTAATATTTTA
GAGGTTGGCAACTTTGAAGATTGGGAAGATGGCTTAGTGGGTAAAGTCCT
TGATGAGAAAAAAAATGATAATATGAGTTGTCAGTAACAGATAAGAGCTG
GGCATAGCAGCAAGCACCTGCAGCAACAGCACTGTTGGAAGACAGGCAAG
AGGAGTCTGGGGCTGATAGATCAGCAAGGTTGTTAACTTTTTGAGCTTCA
GGTTAAATGAGAGACCTTACCTTAAAATATATCACATAGAGAGCAAAAGA
GAAAGATCTCCAGTCTCTATGAGCAAGCGCGAACACATACCCAAATTAAA
ATCGCATTGATATATTGCAATAAAATGAGGTAAATAAGGTGGTGGAAACA
AATTAAGACCGGGAGGACTGTGTGGCAAAATGCTATTTTTAGCCGTTTCT
TTTCCCTCACTCACCCTCTCTTCCCCTCTTTCTCTCTCCTTCCCCCCCCT
TTTCTCCTCCTCCTTTATCTCCTTCCCTTCACTTTTCAATCTTTCTCCCA
GCTTACCCCCTGTTCCTCCCGTCCTTTTTTTCTTTTACCATGCGTCTTTT
CTACCACCCTCCTCCTCTTTTTTCGTCCTCCCCCCCGTCCGCCCTTACCT
TTTTTCCTCTTTTCCCTTTTTCTCTTTG
NCTTATACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGAATACAAACAAAAC
AGATTATCAAGTTGGCTTCATTCCAGAGATGTAGAGATGGATGGCTCGAG
ATATATTATAAATTACATATATACATATATATGTAATATGTTATAAATTA
CACAAATGGACTATAAGACAGAAATCGCATGGCCATCAAAATAGATGCAG
AAAGGGCTTTTGACAAATTTCAACATCCTTTCATGTTAAAGTCCTGAAGA
TAACTAGAAGAGAAAGAATGTACTTTAACAATATAAAGGGTATATAAGAC
AAACTTATAACCAACATTAAAAGGGGAGAACCTCAAAGCATTTACAATAA
AGCCAGGAAAAAGACAAGGCTGCTTCCTCTTTTCACTCCTACTCAATACA
GTGATATAATTCCTAGTTAGCCAGGGCAGTAAGAGATCCAGGGGCTCAGT
GGGTCAGAGCACTGGCTACTCTTCTAAAGGACCCAAGGTCAATAAATGCC
CAGCTCTAACTCCAATTCCAAGAGATCTAACACCCTCTGCCCTCTTCCGG
GCTTCACAGGCAACAGGTGTGCACATGGTACACAGGCATTCATTCAGGGC
AACCATCCATAAACCCTTGNATAATTATTATTAATTTTTATTAAGGGCAG
ATAATATATTATTACCCGATTACTATGTTTCTATACCCGGCCACCCCAAA
AACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_l01.b1 MSMg01no350_l01.b1 CHROMAT_FILE:
MSMg01no350_l01.b1 PHD_FILE: MSMg01no350_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:42 2005
         (375 letters)



>mm_chr2_81708368_81709142
          Length = 775

 Score =  640 bits (331), Expect = 0.0
 Identities = 361/371 (97%), Gaps = 1/371 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacagtatttcctttgtcgcaaggcttggggacctctgtaccagcttcatcttt 64
           ||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 205 gaattccacagtacttgctttgtcgcaaggcttggggacatctgtaccagcttcatcttt 264

                                                                       
Query: 65  cccaccctcggaaaaaggaatatgtaatattttagaggttggcaactttgaagattggga 124
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 265 cccaccctcggaaaaaggaatatgtaatattttagaggttagcaactttgaagattggga 324

                                                                       
Query: 125 agatggcttagtgggtaaagtccttgatgagaaaaaaaatgataatatgagttgtcagta 184
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 325 agatggcttagtgggtaaagtccttgatgagaaaaaaa-tgataatatgagttgtcagta 383

                                                                       
Query: 185 acagataagagctgggcatagcagcaagcacctgcagcaacagcactgttggaagacagg 244
           ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 384 acagataagagctgggcatagcaccacgcacctgcagcaacagcactgttggaagacagg 443

                                                                       
Query: 245 caagaggagtctggggctgatagatcagcaaggttgttaactttttgagcttcaggttaa 304
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 444 caagaggagtctggggctgatagatcagcaaggttggtaactttttgagcttcaggttaa 503

                                                                       
Query: 305 atgagagaccttaccttaaaatatatcacatagagagcaaaagagaaagatctccagtct 364
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 504 atgagagaccttaccttaaaatatatcacatagagcgcaaaagagaaagatctccagtct 563

                      
Query: 365 ctatgagcaag 375
           |||||| ||||
Sbjct: 564 ctatgatcaag 574


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)