Query= MSMg01no351_i17.b1 MSMg01no351_i17.b1 CHROMAT_FILE:
MSMg01no351_i17.b1 PHD_FILE: MSMg01no351_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:49 2005
(476 letters)
>mm_chr2_30624307_30625182
Length = 876
Score = 845 bits (437), Expect = 0.0
Identities = 463/475 (97%), Gaps = 7/475 (1%)
Strand = Plus / Plus
Query: 5 gaattcaaaag----attttcgtagccaggtttagtggcacacatctttaatctcagtac 60
||||||||||| | ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 204 gaattcaaaagaacca---tcgtagccaggtttagtggcacatatctttaatctcagtac 260
Query: 61 caggaagcagaggcaggtggatctatgtgagcttcaggacagcctcatctacatagtgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggaagcagaggcaggtggatctatgtgagcttcaggacagcctcatctacatagtgaa 320
Query: 121 ttccctgtttcagaaaatcaaagaaagaaagacagcctgccaacctcagcagctcctaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttccctgtttcagaaaatcaaagaaagaaagacagcctgccaacctcagcagctcctaag 380
Query: 181 acaaggccaacggaggagagagaaatctcgtgccttcggagcctgcatggaggtcagcca 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaaggccaacgaaggagagagaaatctcgtgccttcggagcctgcatggaggtcagcca 440
Query: 241 cctccaaggacccacacagtggcgatgagaaagaatggataagagaaaggaccagggaaa 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 cctccaaggacccacacagtggcgatgagaaagaatggaaaagagaaaggaccagggaaa 500
Query: 301 tggcagtgccaaggctctagccatcgtctaaaagaaagatacgggagagaagaaagagaa 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 501 tggcagtgccaaggctctagccatcgtctaaaagaaagatacgggagagaagaaagagga 560
Query: 361 agtcatacctcagtcaggactcagagtggccggcaaacccaaccgaacctcatggtggca 420
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 561 agtcatacctcagtcaggactcagagtggctggcaaacccaaccgaacctcatggtggca 620
Query: 421 ctgtagcaaccacttggttgattgttggtttgttttggaggaggattgcttctgg 475
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgtagcaaccacttggttgattgttggtttgttttggaggaggattgcttctgg 675
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space: 403556
Effective search space used: 403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no351_i17.g1 MSMg01no351_i17.g1 CHROMAT_FILE:
MSMg01no351_i17.g1 PHD_FILE: MSMg01no351_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:49 2005
(411 letters)
>mm_chr2_30859725_30860535
Length = 811
Score = 748 bits (387), Expect = 0.0
Identities = 405/411 (98%)
Strand = Plus / Minus
Query: 1 cacccagagacctccaggaagtcagcagggctgctgctctgaacacctaagcagggctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 cacccagagacctccaggaagtcagcagggctgctgctctgaacacctaagcagggctgt 552
Query: 61 gtgtgtccaatggccccttagctactctgcccagctcaggctccaaacaacacagatgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gtgtgtccaatggccccttagctactctgcccagctcaggctccaaacaacacagatgag 492
Query: 121 gaggtcacacacacggggcctctgaccagtgcatcacagagctgagaaagaaatggccat 180
|||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 491 gaggtcacacacacagggcctctgaccagcgcatcacagagctgagaaaggaatggccat 432
Query: 181 gtctccagggatggcacattctgtgtgcttgccacctgcccactgtgccatagcagctgg 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gtctccagggacggcacattctgtgtgcttgccacctgcccactgtgccatagcagctgg 372
Query: 241 agccagcagagacaaggccctggcactttccatgcccagcctgacccaacagctcctctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 agccagcagagacaaggccctggcactttccatgcccagcctgacccaacagctcctctt 312
Query: 301 gttgctggctgttacctcgaggcttcaggtcgtcatcctcagactcagactctccttcat 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gttgctggccgttacctcgaggcttcaggtcgtcatcctcagactcagactctccttcat 252
Query: 361 cagccacagcaatagggacagctttcagtgggtgggagggtggtggggagt 411
|||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 251 cagccacagcaatagggacagctttcagcgggtgggagggtggtggggagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space: 322404
Effective search space used: 322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
