BAC Information

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BAC

Clone NameMSMg01-351K03
Chromosome2 (Build37)
Map Location 179,079,985 - 179,146,516
singlet/doubletdoublet
Overlap geneLOC100039413
Upstream geneSycp2, Ppp1r3d, 9030418K01Rik, Cdh26, LOC100039368, LOC665264, LOC100043168
Downstream geneCdh4, Taf4a, Lsm14b, Psma7, Ss18l1, Gtpbp5, Hrh3, Osbpl2, LOC100039470, Adrm1, Lama5, Rps21, Cables2, BC066135, Gata5, EG622283
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351K03.T7 (MSMg01no351_k03.b1)MSMg01-351K03.TJ (MSMg01no351_k03.g1)
ACCAG462957AG462958
length794756
length of high quality
(start - end)		218 (53 - 270)514 (83 - 596)
definitionCHROMAT_FILE: MSMg01no351_k03.b1 PHD_FILE: MSMg01no351_k03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:56 2005CHROMAT_FILE: MSMg01no351_k03.g1 PHD_FILE: MSMg01no351_k03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(179,079,985 - 179,080,197)(179,146,214 - 179,146,516)
sequence
NGGGGCTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAAGCGTTCCTGTGCGTCTGATGGGAACACAGCCTAGTG
ATCATTAGCATCCTTAAGTCTGGTCTTCCTGGGGCTGATGCCTACCCAAC
CCTACTCCAGAGCAGGAGTTCTCTTAACTAGGCCCTTCCTCCAAATCTCA
TCAATGCTATGGGCGCAGAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTNNGGNNNGGNNGNNNNNNNNNTNNNNNNNNNN
NNNGNNNNNNNNNNNNNNNNNNNNNNGTTTTTTTTTTTTTNNNTTTTTTN
NTTTTTGNTNTNTNNTTTTTTTTTTTNTTNTGTTTNNTTTTTNTGTGTTT
TGGTGTTGTTTGTTTGGTTTTGNTGNTTTTTTNTNNNNNNTTTTTTTTTN
TTTTTTTTGGTTTNGTTTTTTTGTGTGNTTTTTTTTTTTTTGTTTNNTTT
TTTTTTTTNTTNTTNTTGTTTGTTGTTTTTTTTGGNNTTTTTGTGNNTTT
GTTNNTGTTTTTTTNTNTGGTGNNNNNTTTGGTTTTTTTTTTTTGTTTTT
TGTTTTNTTTGTTTTTTTTTTTTTTTTGTGGNTNGGGGTTGTTGTNNNTN
GTTGTTTGTGTTTTTTTTTTTNTGTTGNTTTTTTTTTGGTNTTTTNNNNT
TTGTGTTNTTTTTTNNNTTTTGTTTTTTTTGNNNNTTTTTTTTTGTTTGT
TTTTTTTTTTTTTTTTTGTTTTTTTTNNNNTTTGTGGTTTTTTT

NNNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCCTCCCATACAGACAG
CAGGAAATTCTGTGCTGGTTAGTCTTGTCAACCTGACAAGGATGGAGTTG
CCTGGGAAGAGAAAACTTCAACTAAGGAGTTTCCTCCATCAGACTGGCAG
CGAGCCTGAGTGTCTGGTGTTTTCTTGACTGATGATTGATGTAGGGGTGT
GCAGCCCACTATGAGTGGTACCAACCCTGGGATGCTCATCCGGGGTTGTA
TAAGAAAGCAAGCTGAGCAAACCATGAGGGGCAAACCAGTACACGTCCTT
CCTCAATGGTCTCTGCTTCATTTTGGTCTCAGGTTCCTGCCCTTGCTTTA
CATGATGATGCTCTATTACCTGGAAGTGTAAGGGGAAACATGCCTTCCTC
CTCCAAGCCTGTCTTGGTCAGTGTCATGTCACAACATCAGAAAGCAAAGA
GGCACACTCTTGGATGAAATTCCAAGTTGGCACAAAGTCACCAGGAGCAG
TGGGAAGCAAAGTGACTCCTGTGATGATTGGGGTGTGCGCTCATCCTATG
GTTCCTAGTGTTATCTTTGTTGCTGTGATAAAATGTCCCTGGGANAGGAA
CTGAGTGGAAAAAGGGCTCATAGCTCACGTCTTCCGGTCACAGGCCTCTA
GGTCAGGGAAGCTGCATAAGCAGGGTAATGTATCCCCCCCCCAAAAGAAT
GACTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_k03.b1 MSMg01no351_k03.b1 CHROMAT_FILE:
MSMg01no351_k03.b1 PHD_FILE: MSMg01no351_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:56 2005
         (218 letters)



>mm_chr2_179079782_179080399
          Length = 618

 Score =  412 bits (213), Expect = e-120
 Identities = 213/213 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaagcgttcctgtgcgtctgatgggaacacagcctagtgatcattagcatcctt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaagcgttcctgtgcgtctgatgggaacacagcctagtgatcattagcatcctt 263

                                                                       
Query: 64  aagtctggtcttcctggggctgatgcctacccaaccctactccagagcaggagttctctt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aagtctggtcttcctggggctgatgcctacccaaccctactccagagcaggagttctctt 323

                                                                       
Query: 124 aactaggcccttcctccaaatctcatcaatgctatgggcgcagaggtgtgtgtgtgtgtg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aactaggcccttcctccaaatctcatcaatgctatgggcgcagaggtgtgtgtgtgtgtg 383

                                            
Query: 184 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 216
           |||||||||||||||||||||||||||||||||
Sbjct: 384 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 416


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 218
Length of database: 618
Length adjustment: 9
Effective length of query: 209
Effective length of database: 609
Effective search space:   127281
Effective search space used:   127281
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no351_k03.g1 MSMg01no351_k03.g1 CHROMAT_FILE:
MSMg01no351_k03.g1 PHD_FILE: MSMg01no351_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:56 2005
         (514 letters)



>mm_chr2_179145603_179146516
          Length = 914

 Score =  571 bits (295), Expect = e-167
 Identities = 301/303 (99%)
 Strand = Plus / Minus

                                                                       
Query: 212 ggttgtataagaaagcaagctgagcaaaccatgaggggcaaaccagtacacgtccttcct 271
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 ggttgtataagaaagcaagctgagcaaaccatgaggggcaaaccagtacacgtccttcct 855

                                                                       
Query: 272 caatggtctctgcttcattttggtctcaggttcctgcccttgctttacatgatgatgctc 331
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 854 caatggtctctgcttcattttggtctcaggttcctgcccttgccttacatgatgatgctc 795

                                                                       
Query: 332 tattacctggaagtgtaaggggaaacatgccttcctcctccaagcctgtcttggtcagtg 391
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 tattacctggaagtgtaaggggaaacatgccttcctcctccaagcctgtcttggtcagtg 735

                                                                       
Query: 392 tcatgtcacaacatcagaaagcaaagaggcacactcttggatgaaattccaagttggcac 451
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tcatgtcacaacatcagaaagcaaagaggcacactcttggatgaaattccaagttggcac 675

                                                                       
Query: 452 aaagtcaccaggagcagtgggaagcaaagtgactcctgtgatgattggggtgtgcgctca 511
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 674 aaagtcaccaggagcagtgggaagcaaagtgactcctgtgatgattggggtgtgcgctta 615

              
Query: 512 tcc 514
           |||
Sbjct: 614 tcc 612


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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