BAC Information

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BAC

Clone NameMSMg01-351M08
Chromosome2 (Build37)
Map Location 123,544,954 - 123,545,339
singlet/doubletsinglet
Overlap genenone
Upstream genePldn, Sqrdl
Downstream gene4930517E11Rik, LOC100043360, Sema6d, LOC100043367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351M08.T7 (MSMg01no351_m08.b1)MSMg01-351M08.TJ (MSMg01no351_m08.g1)
ACCAG463061AG463062
length753762
length of high quality
(start - end)
453 (51 - 503)429 (83 - 511)
definitionCHROMAT_FILE: MSMg01no351_m08.b1 PHD_FILE: MSMg01no351_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:06 2005CHROMAT_FILE: MSMg01no351_m08.g1 PHD_FILE: MSMg01no351_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGA
TCCGCGGAATTCCTGATCTTTCCAAGACTTTTATCATGAATGGGTGTTGG
ATTTTGTCAAATGCTTTCTCTGCATCTAATGAGATGATCATGTGGTTTTT
GTCTTTGAGTTTGTTCATGTACTGGATTACGTTGATGGATTTCTGTATAT
TGAAATATCCCTGCATCCCTGGATGAAACCTACTTGGTCAGGATGGATGA
TTGTTTTGATGTGTTCTTCGATTTGGTTAGCGAGAACTTTATTGAGGATT
TTTGCATTGATATTCATAAGGGAAATTGGTCTGAAGTTCTCTATCTTTGT
TGGGTCTTTTTGTGGTTTAGGTATCAGAATAATTGTGGCTTCATAGAAAG
ATTTGAGTTGGGTAGAATACCTTCTGTTTCTATTTTGTGGAATAGTTTGT
GAAGTACTGGGATTAGATCTTCTTTGAAGGTCTGATATAACTCTGCACTA
AACCCATCTGGTCCTGGGCTTTTTTTGTTTGGGAGACTATTAATGACTGC
TTCTATTTCTTTATGGGATATACGACTGTTTATATTATTAACCCTGATCT
TGATTTATTTTTTGTACCTGGCTTCTGTCTAAAATCTTGTTACTTTTCCC
CCACGTTCCACTGTTATTGTTGAAAATTTCCTTTCCTCTCATAAACTCCC
CACGTTCGTTTCCGCTTTTTTTTATTCGTCCCTCCACGAAATTATCTCCT
TTN
NNNAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGGAAGTTTCTTGCTTT
GTTCACTATGTAAAGTTAGTAGTAAGGAAGAAGGGGGAAGTGGGTGCTCT
GACTTGTAGCTGCTGCGCAATCTAGCATCATGGCTTTGAGCTGGAACACA
TGGCATGACTAAAAACTGATTGCAACTGTGACAGAGATTGATCATATCAA
GATTTCAGTGTTCAAAATTGTCTTAGTCACTGTTGTAGCTGTGAAGAGAC
ACCATGACCAAGGTAACTCTTATCAAGGAAAGTGTTGAATCAGAAGTTTT
CTTAAAGTTTCAGAGGTTTAGTACATTAACATCATGGCGTGGAGTCTGGC
GGTACACACAGCAATGGAGCAGGAGTTGAGGGATACATCCTCATCAACAG
AGAGAGAGAGAGAGAGGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGTGAGAGAGAAANATGANNGGTTAATTGATGTTTTTT
ATATAAAAATTATTAGAAGTTTCTAAATCTATATTATAAATTATATTGTG
ATTCCTATAGATTTCTTTTTATATTGGTTCTTTTTTAATCCCTATTTTCA
TTTTCCCCTTACATACATTTCCCTCATATTTACTTTGTTCCCCATCGCCT
TCTCATCATTTGCCTATCCCCCCCCCTTTTTCCTTTCTATCAATCTTTTT
TCTCTTATCAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_m08.g1 MSMg01no351_m08.g1 CHROMAT_FILE:
MSMg01no351_m08.g1 PHD_FILE: MSMg01no351_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:06 2005
         (429 letters)



>mm_chr2_123544954_123545782
          Length = 829

 Score =  725 bits (375), Expect = 0.0
 Identities = 384/387 (99%), Gaps = 1/387 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttggaagtttcttgctttgttcactatgtaaagttagtagtaaggaagaagggggaagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ttggaagtttcttgctttgttcactatgtaaagttagtagtaaggaagaagggggaagtg 327

                                                                       
Query: 61  ggtgctctgacttgtagctgctgcgcaatctagcatcatggctttgagctggaacacatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ggtgctctgacttgtagctgctgcgcaatctagcatcatggctttgagctggaacacatg 267

                                                                       
Query: 121 gcatgactaaaaactgattgcaactgtgacagagattgatcatatcaagatttcagtgtt 180
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gcacaactaaaaactgattgcaactgtgacagagattgatcatatcaagatttcagtgtt 207

                                                                       
Query: 181 caaaattgtcttagtcactgttgtagctgtgaagagacaccatgaccaaggtaactctta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 caaaattgtcttagtcactgttgtagctgtgaagagacaccatgaccaaggtaactctta 147

                                                                       
Query: 241 tcaaggaaagtgttgaatcagaagttttcttaaagtttcagaggtttagtacattaacat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 tcaaggaaagtgttgaatcagaagttttcttaaagtttcagaggtttagtacattaacat 87

                                                                       
Query: 301 catggcgtggagtctggcggtacacacagcaatggagcaggagttgagggatacatcctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86  catggcgtggagtctggcggtacacacagcaatggagcaggagttgagggatacatcctc 27

                                      
Query: 361 atcaacagagagagagagagagagggg 387
           |||||||||||||||||||||| ||||
Sbjct: 26  atcaacagagagagagagagag-gggg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space:   344400
Effective search space used:   344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)